mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 97,137 | C→T | R390C (CGC→TGC) | murE → | UDP‑N‑acetylmuramoylalanyl‑D‑glutamate‑2, 6‑diaminopimelate ligase |
| RA | 854,225 | C→A | A312S (GCC→TCC) | ybiW ← | predicted pyruvate formate lyase |
| RA | 1,017,152 | A→C | K282N (AAA→AAC) | ycbS → | predicted outer membrane usher protein |
| RA | 1,305,683 | Δ1 bp | coding (557/1461 nt) | cls ← | cardiolipin synthetase |
| RA | 1,329,516 | C→T | H33Y (CAC→TAC) | topA → | DNA topoisomerase I |
| RA | 1,400,364 | T→C | D21G (GAT→GGT) | abgB ← | predicted peptidase, aminobenzoyl‑glutamate utilization protein |
| JC | 1,733,297 | (CGTATGAA)1→2 | coding (333/1413 nt) | pykF → | pyruvate kinase |
| MC JC | 2,100,308 | Δ22,146 bp | ogrK–[ECB_02013] | 27 genes ogrK, yegZ, ECB_01989, ECB_01990, ECB_01991, ECB_01992, ECB_01993, ECB_01994, ECB_01995, ECB_01996, ECB_01997, ECB_01998, ECB_01999, ECB_02000, ECB_02001, ECB_02002, ECB_02003, ECB_02004, ECB_02005, ECB_02006, ECB_02007, ECB_02008, ECB_02009, ECB_02010, ECB_02011, ECB_02012, [ECB_02013] |
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| RA | 2,131,466 | (A)9→8 | intergenic (‑125/+175) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase |
| RA | 2,193,779 | G→T | L143I (CTT→ATT) | yeiB ← | conserved inner membrane protein |
| RA | 2,348,313 | C→A | L117L (CTG→CTT) | nuoA ← | NADH dehydrogenase subunit A |
| RA | 2,874,154 | (GT)5→4 | coding (513‑514/936 nt) | lysR → | DNA‑binding transcriptional dual regulator |
| RA | 3,497,639 | A→G | F133L (TTC→CTC) | glgP ← | glycogen phosphorylase |
| RA | 3,762,741 | A→T | K662I (AAA→ATA) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| RA | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| MC JC | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| RA | 3,928,260 | T→A | I15N (ATC→AAC) | rho → | transcription termination factor Rho |
| RA | 4,179,757 | T→G | intergenic (+51/‑136) | yjaG → / → hupA | hypothetical protein/HU, DNA‑binding transcriptional regulator, alpha subunit |
| RA | 4,202,378 | T→C | H61R (CAC→CGC) | iclR ← | DNA‑binding transcriptional repressor |
| JC JC | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 761970–762001 | 762183–762161 | 161–214 | 15 [12] | [13] 15 | [lysY]–[lysZ] | [lysY],[lysZ] |
| * | * | ÷ | REL606 | 2032122–2032186 | 2052733 | 20548–20612 | 15 [14] | [14] 15 | [manB]–[wzxC] | [manB],manC,insB‑14,insA‑14,wbbD,wbbC,wzy,wbbB,wbbA,vioB,vioA,wzx,rmlC,rfbA,rfbD,rfbB,galF,wcaM,wcaL,wcaK,[wzxC] |
| * | * | ÷ | REL606 | 2052810 | 2055437–2055363 | 2554–2628 | 15 [14] | [13] 15 | [wzxC]–[cpsG] | [wzxC],wcaJ,[cpsG] |