Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A60 F1 I1 R1
|
14 |
61.1 |
3976207 |
96.5% |
3837039 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
2,358,409 |
T→A |
I24N (ATC→AAC) |
pta → |
phosphate acetyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 2,358,409 | 0 | T | A | 100.0%
| 332.7
/ NA
| 87 | I24N (ATC→AAC) | pta | phosphate acetyltransferase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base A (47/40); total (47/40) |
GTGTCCCGTATTATTATGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGA > REL606/2358339‑2358481
|
gtgtCCCGTATTATTATGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTg < 2:674969/76‑1 (MQ=255)
gtgtCCCGTATTATTATGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTg < 1:96697/76‑1 (MQ=255)
tgtCCCGTATTATTATGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGc > 1:1804943/1‑76 (MQ=255)
tgtCCCGTATTATTATGCTGATCCCTACCGGAACCAGCGTCGGCCGGACCAGCGCCAGCCTTGGCGTGAACCGGGc > 1:1251720/1‑76 (MQ=255)
tgtCCCGTATTATTATGCTGATCCCTACCCGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGc > 1:1691360/1‑76 (MQ=255)
gtCCCGTATTATTATGCTGATCCCTGCCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCa < 1:945008/76‑1 (MQ=255)
gtCCCGTATTATTATGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCa > 1:1672833/1‑76 (MQ=255)
gtCCCGTATTATTATGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCa < 1:365984/76‑1 (MQ=255)
cGTATTATTATGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATgg < 2:1324262/76‑1 (MQ=255)
tattattatGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGaa > 2:1230688/1‑76 (MQ=255)
attattatGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAAc > 1:1214444/1‑76 (MQ=255)
ttattatGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACg < 1:110987/76‑1 (MQ=255)
ttattatGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACg > 1:739847/1‑76 (MQ=255)
tattatGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGc > 1:361461/1‑76 (MQ=255)
ttatGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCaa < 1:1034513/76‑1 (MQ=255)
ttatGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCaa > 2:1347505/1‑76 (MQ=255)
atGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAg > 1:1705370/1‑76 (MQ=255)
atGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAg > 1:494246/1‑76 (MQ=255)
gATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGtt > 2:671815/1‑76 (MQ=255)
gATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGtt < 1:679355/76‑1 (MQ=255)
gATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGtt > 2:1642141/1‑76 (MQ=255)
aTCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTc > 1:571911/1‑76 (MQ=255)
aTCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTc < 1:41851/76‑1 (MQ=255)
tCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCg > 2:55879/1‑76 (MQ=255)
ccTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTc > 2:874002/1‑76 (MQ=255)
cTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCt > 2:1359617/1‑76 (MQ=255)
cTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCt < 2:661684/76‑1 (MQ=255)
tACCGGAACCCGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTg > 2:818010/1‑76 (MQ=255)
tACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTg > 2:1194071/1‑76 (MQ=255)
tACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTg < 2:196980/76‑1 (MQ=255)
tACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTg < 2:1010921/76‑1 (MQ=255)
acccGTAACCAGCGTCGGTCTGACCGGCGTCAGCCTTGGCGTTAACCGTGCAATGGAACGCAAAGGCGTTCGTCTg < 2:1054327/74‑1 (MQ=255)
aCCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGa > 2:6033/1‑76 (MQ=255)
cctgAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAg < 2:1256458/73‑1 (MQ=255)
ccGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAg > 2:1748984/1‑76 (MQ=255)
ccGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAg < 1:64471/76‑1 (MQ=255)
gAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGt > 2:249229/1‑76 (MQ=255)
agccAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGtt < 2:781390/74‑1 (MQ=255)
aaCCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGtt < 1:1775436/76‑1 (MQ=255)
aaCCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGtt > 2:1211439/1‑76 (MQ=255)
aaCCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGtt > 2:416917/1‑76 (MQ=255)
aCCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGttt > 2:1512421/1‑76 (MQ=255)
aCCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGttt < 2:949648/76‑1 (MQ=255)
cAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTc > 2:470427/1‑76 (MQ=255)
cAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTc < 1:1777899/76‑1 (MQ=255)
cAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTc > 2:357416/1‑76 (MQ=255)
cAGCGTCGGTCTGACCAGCGTCAGCCGTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTc < 2:1608121/76‑1 (MQ=255)
aGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCa < 1:1288889/76‑1 (MQ=255)
aGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCa < 1:1305305/76‑1 (MQ=255)
aGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCa < 2:1088558/76‑1 (MQ=255)
cGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCaaa > 2:1522976/1‑76 (MQ=255)
cGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCaaa > 2:1583333/1‑76 (MQ=255)
gTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAAc < 1:1765094/76‑1 (MQ=255)
cGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAAccc > 2:565758/1‑75 (MQ=255)
ggTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTa > 1:1645858/1‑76 (MQ=255)
ggTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTa < 1:525659/76‑1 (MQ=255)
ggTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTa > 1:1939081/1‑76 (MQ=255)
cgTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTa < 2:1645226/75‑1 (MQ=255)
gTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTAt > 1:344366/1‑76 (MQ=255)
tGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGc < 1:1377420/76‑1 (MQ=255)
gACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCt > 2:1377446/1‑76 (MQ=255)
gACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCt > 2:1029011/1‑76 (MQ=255)
gACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCt > 2:823553/1‑76 (MQ=255)
gACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCt > 2:269005/1‑76 (MQ=255)
aCCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCTc > 2:827133/1‑76 (MQ=255)
ccAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCTCa < 1:1800064/76‑1 (MQ=255)
ccAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCTCa < 2:191063/76‑1 (MQ=255)
gCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCTCAGcc < 1:1032165/76‑1 (MQ=255)
gCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCTCAGcc < 1:1388688/76‑1 (MQ=255)
cGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCaaa < 2:297299/61‑1 (MQ=255)
cGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCaaa > 1:297299/1‑61 (MQ=255)
cGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCTCAGcca > 1:1435088/1‑75 (MQ=255)
cGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCTCAGCcg < 2:1804942/76‑1 (MQ=255)
cGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCTCAGCcg < 2:1691360/76‑1 (MQ=255)
cGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCTCAGCcg < 2:1251720/76‑1 (MQ=255)
gTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCTCAGCcgc < 2:213323/76‑1 (MQ=255)
tCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCTCAGCcgcn < 1:590547/76‑2 (MQ=255)
tCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCTCAGCcgcg < 2:534588/76‑1 (MQ=255)
tCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCTCAGCcgcg > 2:1850303/1‑76 (MQ=255)
aGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTa > 2:1465733/1‑76 (MQ=255)
ccTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTAcc > 2:713552/1‑76 (MQ=255)
cTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCg > 2:327744/1‑76 (MQ=255)
tGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGt > 2:721727/1‑76 (MQ=255)
ggCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTAGCGCTCAGCCGCGTACCGGTg < 1:588911/76‑1 (MQ=255)
cGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGc < 2:162092/76‑1 (MQ=255)
gTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCg < 2:988741/76‑1 (MQ=255)
tGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAACCCTATCGCTCAGCCGCGTACCGGTGGCGa > 2:66903/1‑76 (MQ=255)
tGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGa > 2:86035/1‑76 (MQ=255)
tGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGAGCCGa > 2:1880270/1‑76 (MQ=255)
|
GTGTCCCGTATTATTATGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGA > REL606/2358339‑2358481
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
