breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	annotation	gene	description
RA	474,837	C→T	E157K (GAA→AAA)	ybaL ←	predicted transporter with NAD(P)‑binding Rossmann‑fold domain
JC JC	1,305,420	IS150 (–) +3 bp	coding (818‑820/1461 nt)	cls ←	cardiolipin synthetase
RA	1,329,516	C→T	H33Y (CAC→TAC)	topA →	DNA topoisomerase I
JC	1,733,297	(CGTATGAA)1→2	coding (333/1413 nt)	pykF →	pyruvate kinase
RA	2,193,779	G→T	L143I (CTT→ATT)	yeiB ←	conserved inner membrane protein
RA	2,358,409	T→A	I24N (ATC→AAC)	pta →	phosphate acetyltransferase
RA	2,665,436	(A)7→6	coding (405/483 nt)	yfiB →	predicted outer membrane lipoprotein
RA	3,762,741	A→T	K662I (AAA→ATA)	spoT →	bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase
RA	3,875,632	(T)7→8	intergenic (‑66/+287)	glmU ← / ← atpC	bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon
MC JC	3,894,997	Δ6,934 bp	IS150‑mediated	rbsD–[yieO]	rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO]
RA	3,928,260	T→A	I15N (ATC→AAC)	rho →	transcription termination factor Rho
RA	4,097,134	G→A	Q147* (CAG→TAG)	glpF ←	glycerol facilitator
RA	4,202,382	T→G	T60P (ACC→CCC)	iclR ←	DNA‑binding transcriptional repressor
JC JC	4,524,522	IS186 (+) +6 bp	coding (494‑499/549 nt)	fimA →	major type 1 subunit fimbrin (pilin)

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	REL606	495483–498327	498846–498336	10–3364	19 [18]	[16] 20	rhsD	rhsD element protein