mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 3,983,700 | 0 | T | G | 47.4% | 9.3 / 12.3 | 19 | T397P (ACC→CCC) | ECB_03713 | conserved hypothetical protein |
| * | REL606 | 1,747,903 | 0 | G | T | 36.5% | 168.6 / 100.6 | 96 | A8S (GCA→TCA) | ydiL | hypothetical protein |
| * | REL606 | 2,296,329 | 0 | A | C | 34.3% | 131.4 / 33.6 | 70 | intergenic (‑149/‑66) | inaA/yfaH | hypothetical protein/hypothetical protein |
| * | REL606 | 1,875,483 | 0 | G | C | 32.2% | 265.5 / 151.1 | 149 | intergenic (+156/‑28) | yeaB/sdaA | predicted NUDIX hydrolase/L‑serine deaminase I |
| * | REL606 | 1,688,990 | 0 | A | C | 28.3% | 100.1 / 10.9 | 46 | T92P (ACC→CCC) | nth | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) |
| * | REL606 | 2,448,098 | 0 | T | G | 27.7% | 101.9 / 13.0 | 47 | F278V (TTT→GTT) | nupC | nucleoside (except guanosine) transporter |
| * | REL606 | 1,176,010 | 0 | T | G | 26.7% | 134.1 / 12.3 | 60 | A37A (GCA→GCC) | fhuE | ferric‑rhodotorulic acid outer membrane transporter |
| * | REL606 | 4,141,009 | 0 | G | A | 25.0% | 99.4 / 10.0 | 40 | E28K (GAA→AAA) | yijC | DNA‑binding transcriptional repressor |
| * | REL606 | 4,043,426 | 0 | T | A | 24.7% | 183.7 / 21.7 | 74 | I200F (ATT→TTT) | yihO | predited transporter |
| * | REL606 | 4,169,232 | 0 | A | T | 23.8% | 165.2 / 16.5 | 63 | intergenic (+48/‑165) | rpoC/htrC | DNA‑directed RNA polymerase subunit beta'/heat shock protein |
| * | REL606 | 154,497 | 0 | T | G | 23.7% | 181.2 / 22.5 | 76 | A191A (GCA→GCC) | yadL | predicted fimbrial‑like adhesin protein |
| * | REL606 | 2,197,867 | 0 | T | G | 23.4% | 108.4 / 14.3 | 47 | A47A (GCA→GCC) | cirA | ferric iron‑catecholate outer membrane transporter |
| * | REL606 | 1,484,105 | 0 | A | G | 22.7% | 102.0 / 16.0 | 44 | G55G (GGA→GGG) | ydcU | predicted spermidine/putrescine transporter subunit |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3021732 = | 109 (1.760) | 13 (0.230) | 7/138 | 5.3 | 12.5% | coding (953/1140 nt) | ECB_02821 | hypothetical protein |
| ? | REL606 | 3022271 = | 82 (1.440) | coding (414/1140 nt) | ECB_02821 | hypothetical protein | |||||
| * | ? | REL606 | = 2037366 | 67 (1.080) | 7 (0.120) | 5/136 | 6.1 | 10.7% | coding (765/1176 nt) | wzy | O antigen polymerase (Wzy) |
| ? | REL606 | = 2037865 | 56 (1.000) | coding (266/1176 nt) | wzy | O antigen polymerase (Wzy) | |||||
| * | ? | REL606 | = 671327 | 76 (1.230) | 4 (0.070) | 4/130 | 6.4 | 5.9% | intergenic (+16/+111) | ECB_00624/lnt | conserved hypothetical protein/apolipoprotein N‑acyltransferase |
| ? | REL606 | = 671328 | 61 (1.140) | intergenic (+17/+110) | ECB_00624/lnt | conserved hypothetical protein/apolipoprotein N‑acyltransferase | |||||
| * | ? | REL606 | 3523362 = | 105 (1.690) | 6 (0.110) | 4/134 | 6.6 | 6.3% | intergenic (‑361/+36) | ugpB/livF | glycerol‑3‑phosphate transporter subunit/leucine/isoleucine/valine transporter subunit |
| ? | REL606 | 3523382 = | 86 (1.550) | intergenic (‑381/+16) | ugpB/livF | glycerol‑3‑phosphate transporter subunit/leucine/isoleucine/valine transporter subunit | |||||
| * | ? | REL606 | 2038724 = | 74 (1.190) | 7 (0.130) | 4/134 | 6.6 | 9.9% | coding (225/822 nt) | wbbB | putative glycosyltransferase WbbB |
| ? | REL606 | 2039214 = | 62 (1.120) | coding (481/747 nt) | wbbA | putative glycosyltransferase WbbA | |||||
| * | ? | REL606 | = 3021547 | 79 (1.270) | 5 (0.100) | 3/126 | 6.8 | 6.1% | coding (1138/1140 nt) | ECB_02821 | hypothetical protein |
| ? | REL606 | = 3021727 | 89 (1.710) | coding (958/1140 nt) | ECB_02821 | hypothetical protein | |||||
| * | ? | REL606 | 1913278 = | 81 (1.310) | 3 (0.050) | 3/142 | 7.4 | 4.0% | intergenic (‑98/+137) | edd/zwf | phosphogluconate dehydratase/glucose‑6‑phosphate 1‑dehydrogenase |
| ? | REL606 | = 3891693 | 69 (1.180) | coding (17/1869 nt) | kup | potassium transporter | |||||