Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A83 F1 I1 R1
|
17 |
39.7 |
2446701 |
98.6% |
2412447 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
2,358,409 |
T→A |
I24N (ATC→AAC) |
pta → |
phosphate acetyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 2,358,409 | 0 | T | A | 100.0%
| 152.7
/ NA
| 40 | I24N (ATC→AAC) | pta | phosphate acetyltransferase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base A (23/17); total (23/17) |
CCGTGTCCCGTATTATTATGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGA > REL606/2358337‑2358481
|
ccGTGTCCCGTATTATTATGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCg > 2:43508/1‑76 (MQ=255)
gtgtCCCGTATTATTATGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTg < 1:93730/76‑1 (MQ=255)
tgtCCCGTATTATTATGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGc > 2:293230/1‑76 (MQ=255)
cccGTATTATTATGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAAt > 1:318578/1‑76 (MQ=255)
gTATTATTATGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGa < 1:1183481/76‑1 (MQ=255)
tattattatGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGaa > 1:475678/1‑76 (MQ=255)
tattattatGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGaa > 1:598604/1‑76 (MQ=255)
attatGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCa < 1:929054/76‑1 (MQ=255)
attatGCTGAGCCCTACAGGAGACAGCGTCGGTCTGCCCAGTGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCa < 1:929068/76‑1 (MQ=255)
tatGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCaaa > 1:623766/1‑76 (MQ=255)
tGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAgg < 2:1066363/76‑1 (MQ=255)
gCTGATCCCTACCGGAACCAGCGTCGGACTGACCAGCGTAAGCCTTAGCGTGAACCGAGCAATGGAACGCAAAGGc > 1:164904/1‑76 (MQ=255)
gATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGtt > 2:371354/1‑76 (MQ=255)
gATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGtt < 1:1098928/76‑1 (MQ=255)
gATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGtt > 1:931455/1‑76 (MQ=255)
aTCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTc < 2:968990/76‑1 (MQ=255)
tCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCg > 2:850694/1‑76 (MQ=255)
cccTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGt > 2:927839/1‑76 (MQ=255)
ccTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTc > 2:327632/1‑76 (MQ=255)
cTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCt < 2:1167620/76‑1 (MQ=255)
cTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCt > 2:955596/1‑76 (MQ=255)
aCCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGa > 1:900179/1‑76 (MQ=255)
ccGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAg < 2:636565/76‑1 (MQ=255)
gAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGt > 1:499964/1‑76 (MQ=255)
aaCCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGtt < 2:921581/76‑1 (MQ=255)
ccAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGtttt < 1:441646/76‑1 (MQ=255)
cAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTc > 2:1047669/1‑76 (MQ=255)
tCTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATc < 2:1049347/76‑1 (MQ=255)
cTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCg < 2:305860/76‑1 (MQ=255)
cTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCg < 1:575894/76‑1 (MQ=255)
cTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCg < 1:628698/76‑1 (MQ=255)
cTGACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCg > 1:6821/1‑76 (MQ=255)
gACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCt > 1:127814/1‑76 (MQ=255)
gACCAGCGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCt < 2:796581/76‑1 (MQ=255)
cGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCTCAGCcg > 2:958246/1‑76 (MQ=255)
cGTCAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCTCAGCcg > 2:825125/1‑76 (MQ=255)
cAGCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGt > 1:759249/1‑76 (MQ=255)
gCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTTTCGCTCAGCCGCGTAc < 2:183185/76‑1 (MQ=255)
gCCTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTAc < 2:943526/76‑1 (MQ=255)
ccTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTAcc > 1:46365/1‑76 (MQ=255)
cTTGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCg > 2:878427/1‑76 (MQ=255)
ttGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCgg < 1:993873/76‑1 (MQ=255)
ttGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTCCAAACCTATCGCTCAGCCGCGTACCgg > 2:877397/1‑76 (MQ=255)
tGGCGTGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGt > 2:877673/1‑76 (MQ=255)
tGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGa > 2:639716/1‑76 (MQ=255)
tGAACCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGa > 2:1154556/1‑76 (MQ=255)
|
CCGTGTCCCGTATTATTATGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGA > REL606/2358337‑2358481
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
