Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A58 F1 I1 R1
|
18 |
55.3 |
3756050 |
96.8% |
3635856 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC JC |
REL606 |
3,270,445 |
IS150 (+) +2 bp :: +CGT |
intergenic (+23/+24) |
nlp → / ← murA |
DNA‑binding transcriptional activator of maltose metabolism/UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 590472 | NA (NA) | 70 (1.230)
+GT |
48/146 |
0.1 |
98.6% |
intergenic (+27/‑71) |
insK‑1/hokE |
IS150 putative transposase; b3558_1/toxic polypeptide, small |
| ? | REL606 |
3270445 = |
1 (0.020) | intergenic (+23/+25) |
nlp/murA |
DNA‑binding transcriptional activator of maltose metabolism/UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase |
| * |
? |
REL606 |
= 2775877 | NA (NA) | 73 (1.240) |
37/150 |
0.5 |
98.6% |
noncoding (1/1443 nt) |
IS150 |
repeat region |
| ? | REL606 |
= 3270446 |
1 (0.020) | intergenic (+24/+24) |
nlp/murA |
DNA‑binding transcriptional activator of maltose metabolism/UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase |
ACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/590401‑590472
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGCAGTTTGT > REL606/3270445‑3270519
||
ACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGTTA < 1:1562763/76‑1
CTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGTTAC > 2:909660/1‑76
TCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGTTACG < 2:456084/76‑1
CCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGTTACGG > 1:1225124/1‑76
AATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGTTACGGGG < 2:1398931/76‑1
AATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGTTACGGGG > 1:1582920/1‑76
TTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGTTACGGGGCT < 1:1637301/76‑1
AATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGTTACGGGGCTGCC < 2:1666681/76‑1
AATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGTTACGGGGCTGCC < 2:1716575/76‑1
CGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGTTACGGGGCTGCCAGCTT < 2:1798491/76‑1
CGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGTTACGGGGCTGCCAGCTT < 2:1264993/76‑1
aGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGTTACGGGGCTGCCAGCTTT > 1:869610/2‑76
AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTaa < 2:846521/76‑3
AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCA > 1:1348895/1‑76
ATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAG > 1:987952/1‑76
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAGA < 1:1848994/76‑1
CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAGAC > 1:986295/1‑76
AGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAGACG < 1:11878/76‑1
AGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAGACG > 1:1170457/1‑76
ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAGACGtt > 1:889901/1‑74
ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAGACGAT > 2:163925/1‑76
CCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAGACGATT < 2:1247400/76‑1
CCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAGACGATT < 2:173273/76‑1
ATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAGACGATTgcc < 2:215997/76‑4
ATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAGACGATTgcc < 2:611233/76‑4
ATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAGACGATTACT < 1:1832155/76‑1
TATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAGACGATTACTC < 2:121978/76‑1
TATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAGACGATTACTC < 2:249796/76‑1
ATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAGACGATTACTCG < 2:1425765/76‑1
CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCT < 2:728034/76‑1
CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCT > 2:594526/1‑76
CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCT > 1:1669779/1‑76
CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTT < 2:565360/76‑1
nGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCAC > 1:87358/2‑76
TGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCAC > 2:1747220/1‑76
GTTTAACTGTCCAACTTTTTGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCACA < 1:1168525/76‑1
TTTAACTGTCCAACTTTTTGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCACAC > 2:1859669/1‑76
TTTAACTGTCCAACTTTTTGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCACAC > 2:641760/1‑76
TTAACTGTCCAACTTTTTGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCACACG < 2:1528181/76‑1
TTAACTGTCCAACTTTTTGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCACACG < 2:222246/76‑1
TTAACTGTCCAACTTTTTGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCACACG > 2:1835896/1‑76
TAACTGTCCAACTTTTTGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCACACGC > 2:919834/1‑76
AACTGTCCAACTTTTTGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCACACGCT < 1:1396247/76‑1
GTCCAACTTTTTGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCACACGCTCAAT < 1:1675808/76‑1
GTCCAACTTTTTGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCACACGCTCAAT > 1:1471683/1‑76
TCCAACTTTTTGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCACACGCTCAATA > 2:484604/1‑76
CCAACTTTTTGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCACACGCTCAATAT < 1:305962/76‑1
CAACTTTTTGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCACACGCTCAATATT < 2:1200527/76‑1
ACTTTTTGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCACACGCTCAATATTTG > 1:1325641/1‑76
TTTGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCACACGCTCAATATTTGCACC > 2:1800345/1‑76
TTGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCACACGCTCAATATTTGCACCT < 2:996233/76‑1
TGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCACACGCTCAATATTTGCACCTA < 1:1848515/76‑1
TGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCACACGCTCAATATTTGCACCTA < 2:236163/76‑1
TGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCACACGCTCAATATTTGCACCTA < 1:436854/76‑1
TGGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCACACGCTCAATATTTGCACCTA > 2:275642/1‑76
GGGGTCAGTACACGTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCACACGCTCAATATTTGCACCTAA < 2:1557062/76‑1
GTCAGTACACGTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCACACGCTCAATATTTGCACCTAAAGC > 1:382385/1‑76
CAGTACACGTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGC > 1:1268593/1‑76
AGTACACGTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCG > 2:648870/1‑76
AGTACACGTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCG > 2:749893/1‑76
AGTACACGTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCACACGCCCAATATTTGCACCTAAAGCGCG < 2:587802/76‑1
AGTACACGTTACAGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCG > 2:556017/1‑76
TACACGTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGCA > 2:953367/1‑76
TACACGTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGCA > 1:54983/1‑76
TACACGTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGCA > 1:1706168/1‑76
ACACGTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGCAG > 2:1370803/1‑76
ACACGTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGCAG > 2:766350/1‑76
ACACGTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGCAG > 1:1727780/1‑76
tttGTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGCAGT > 2:1818740/4‑76
tANGTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGCAGT > 2:1321657/2‑76
ACGTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGCAGTT < 1:1131687/76‑1
GTTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGCAGTTTG > 1:589398/1‑76
TTACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGCAGTTTGT < 1:820286/76‑1
||
ACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/590401‑590472
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TACGGGGCTGCCAGCTTTCAGACGATTACTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGCAGTTTGT > REL606/3270445‑3270519
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
