mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 990,162 | T→G | E111A (GAA→GCA) | ycbC ← | conserved inner membrane protein |
| JC JC | 1,305,487 | IS150 (–) +3 bp | coding (751‑753/1461 nt) | cls ← | cardiolipin synthetase |
| RA | 1,329,516 | C→T | H33Y (CAC→TAC) | topA → | DNA topoisomerase I |
| JC | 1,733,297 | (CGTATGAA)1→2 | coding (333/1413 nt) | pykF → | pyruvate kinase |
| RA | 1,893,840 | A→C | L91R (CTG→CGG) | proQ ← | putative solute/DNA competence effector |
| MC JC | 2,103,915 | (CCAG)7→6 | coding (182‑185/216 nt) | ECB_01992 → | hypothetical protein |
| RA | 2,105,116 | (A)8→7 | intergenic (+77/+135) | ECB_01993 → / ← ECB_01994 | hypothetical protein/hypothetical protein |
| RA | 2,114,852 | (T)8→7 | coding (187/366 nt) | ECB_02002 ← | hypothetical protein |
| RA | 2,193,779 | G→T | L143I (CTT→ATT) | yeiB ← | conserved inner membrane protein |
| JC JC | 3,270,445 | IS150 (+) +2 bp :: +CGT | intergenic (+23/+24) | nlp → / ← murA | DNA‑binding transcriptional activator of maltose metabolism/UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase |
| JC | 3,571,131 | +GTACA | coding (332/435 nt) | uspA → | universal stress global response regulator |
| RA | 3,612,971 | T→C | intergenic (‑32/+151) | dctA ← / ← yhjK | C4‑dicarboxylate transport protein/predicted diguanylate cyclase |
| RA | 3,762,741 | A→T | K662I (AAA→ATA) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| RA | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| MC JC | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| RA | 3,928,783 | G→T | Q189H (CAG→CAT) | rho → | transcription termination factor Rho |
| RA | 4,100,824 | A→T | I136N (ATC→AAC) | hslU ← | ATP‑dependent protease ATP‑binding subunit |
| JC JC | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3571132 = | 2 (0.040) | 195 (3.420) | 97/146 | 0.0 | 99.0% | coding (333/435 nt) | uspA | universal stress global response regulator |
| ? | REL606 | = 3652533 | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region | |||||