Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A58 F1 I1 R1
|
18 |
55.3 |
3756050 |
96.8% |
3635856 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
REL606 |
3,571,131 |
+GTACA |
coding (332/435 nt) |
uspA → |
universal stress global response regulator |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 3571129 | 2 (0.040) | 48 (0.880)
+CAGTA |
39/136 |
0.3 |
96.2% |
coding (330/435 nt) |
uspA |
universal stress global response regulator |
| ? | REL606 |
3571130 = |
2 (0.030) | coding (331/435 nt) |
uspA |
universal stress global response regulator |
GCGGCAGCGGCGACCTGGGCCAAGTTCTGGTCGATGCAATCAAGAAATACGATATGGATCTGGTGGTTTGTGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3571056‑3571129
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CACCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGATCAACAC > REL606/3571130‑3571185
|||||
GCGGCAGCGGCGACCTGGGCCAAGTTCTGGTCGATGCAATCAAGAAATACGATATGGATCTGGTGGTTTGTGGTCA < 1:806584/76‑1
GCGGCAGCGGCGACCTGGGCCAAGTTCTGGTCGATGCAATCAAGAAATACGATATGGATCTGGTGGTTTGTGGTCA < 1:806606/76‑1
CGGCAGCGGCGACCTGGGCCAAGTTCTGGTCGATGCAATCAAGAAATACGATATGGATCTGGTGGTTTGTGGTCAG < 1:982285/76‑1
AGCGGCGACCTGGGCCAAGTTCTGGTCGATGCAATCAAGAAATACGATATGGATCTGGTGGTTTGTGGTCAGTACA > 1:854604/1‑76
GGCGACCTGGGCCAAGTTCTGGTCGATGCAATCAAGAAATACGATATGGATCTGGTGGTTTGTGGTCAGTACACCA < 1:1806764/76‑1
GCGACCTGGGCCAAGTTCTGGTCGATGCAATCAAGAAATACGATATGGATCTGGTGGTTTGTGGTCAGTACACCAC < 1:1083323/76‑1
CGACCTGGGCCAAGTTCTGGTCGATGCAATCAAGAAATACGATATGGATCTGGTGGTTTGTGGTCAGTACACCACC > 1:1142578/1‑76
GACCTGGGCCAAGTTCTGGTCGATGCAATCAAGAAATACGATATGGATCTGGTGGTTTGTGGTCAGTACACCACCA < 2:301899/76‑1
ACCTGGGCCAAGTTCTGGTCGATGCAATCAAGAAATACGATATGGATCTGGTGGTTTGTGGTCAGTACACCACCAG < 1:43785/76‑1
CCTGGGCCAAGTTCTGGTCGATGCAATCAAGAAATACGATATGGATTTGGTGGTTTGTGGTCAGTACACCACCAGG < 1:1438507/76‑1
CTGGGCCAAGTTCTGGTCGATGCAATCAAGAAATACGATATGGATCTGGTGGTTTGTGGTCAGTACACCACCAGGA > 1:1651649/1‑76
TGGGCCAAGTTCTGGTCGATGCAATCAAGAAATACGATATGGATCTGGTGGTTTGTGGTCAGTACACCACCAGGAC < 2:1346584/76‑1
GGGCCAAGTTCTGGTCGATGCAATCAAGAAATACGATATGGATCTGGTGGTTTGTGGTCAGTACACCACCAGGACT < 2:1036295/76‑1
GGCCAAGTTCTGGTCGATGCAATCAAGAAATACGATATGGATCTGGTGGTTTGTGGTCAGTACACCACCAGGACTT < 2:1190717/76‑1
CCAAGTTCTGGTCGATGCAATCAAGAAATACGATATGGATCTGGTGGTTTGTGGTCAGTACACCACCAGGACTTCT < 2:1362008/76‑1
AAGTTCTGGTCGATGCAATCAAGAAATACGATATGGATCTGGTGGTTTGTGGTCAGTACACCACCAGGACTTCTGG < 2:1625909/76‑1
AGTTCTGGTCGATGCAATCAAGAAATACGATATGGATCTGGTGGTTTGTGGTCAGTACACCACCAGGACTTCTGGA < 1:93334/76‑1
AGTTCTGGTCGATGCAATCAAGAAATACGATATGGATCTGGTGGTTTGTGGTCAGTACACCACCAGGACTTCTGGA > 1:1738394/1‑76
GTTCTGGTCGATGCAATCAAGAAATACGATATGGATCTGGTGGTTTGTGGTCAGTACACCACCAGGACTTCTGGAG < 2:675115/76‑1
TGGTCGATGCAATCAAGAAATACGATATGGATCTGGTGGTTTGTGGTCAGTACACCACCAGGACTTCTGGAGCAAA > 1:1653620/1‑76
GGTCGATGCAATCAAGAAATACGATATGGATCTGGTGGTTTGTGGTCAGTACACCACCAGGACTTCTGGAGCAAAC > 2:22497/1‑76
ATGCAATCAAGAAATACGATATGGATCTGGTGGTTTGTGGTCAGTACACCACCAGGACTTCTGGAGCAAACTGATG > 1:435401/1‑76
TGCAATCAAGAAATACGATATGGATCTGGTGGTTTGTGGTCAGTACACCACCAGGACTTCTGGAGCAAACTGATGT < 2:1140570/76‑1
TGCAATCAAGAAATACGATATGGATCTGGTGGTTTGTGGTCAGTACACCACCAGGACTTCTGGAGCAAACTGATGT < 1:1474011/76‑1
GCAATCAAGAAATACGATATGGATCTGGTGGTTTGTGGTCAGTACACCACCAGGACTTCTGGAGCAAACTGATGTC < 2:10773/76‑1
GCAATCAAGAAATACGATATGGATCTGGTGGTTTGTGGTCAGTACACCACCAGGACTTCTGGAGCAAACTGATGTC > 2:1244897/1‑76
TCAAGAAATACGATATGGATCTGGTGGTTTGTGGTCAGTACACCACCAGGACTTCTGGAGCAAACTGATGTCTTCC < 1:298618/76‑1
CAAGAAATACGATATGGATCTGGTGGTTTGTGGTCAGTACACCACCAGGACTTCTGGAGCAAACTGATGTCTTCCG < 2:945667/76‑1
AAGAAATACGATATGGATCTGGTGGTTTGTGGTGAGTACACCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGC < 2:473189/76‑1
AAGAAATACGATATGGATCTGGTGGTTTGTGGTCAGTACACCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGC > 1:940276/1‑76
AAGAAATACGATATGGATCTGGTGGTTTGTGGTCAGTACACCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGC > 2:1355104/1‑76
GAAATACGATATGGATCTGGTGGTTTGTGGTCAGTACACCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCAC > 2:784905/1‑76
GAAATACGATATGGATCTGGTGGTTTGTGGTCAGTACACCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCAC < 1:443803/76‑1
AAATACGATATGGATCTGGTGGTTTGTGGTCAGTACACCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACG > 1:267665/1‑76
ACGATATGGATCTGGTGGTTTGTGGTCAGTACACCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAG > 1:834474/1‑76
ACGATATGGATCTGGTGGTTTGTGGTCAGTACACCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAG < 1:1212095/76‑1
CGATATGGATCTGGTGGTTTGTGGTCAGTACACCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGC < 2:1599441/76‑1
CGATATGGATCTGGTGGTTTGTGGTCAGTACACCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGC < 1:414057/76‑1
ATATGGATCTGGTGGTTTGTGGTCAGTACACCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTG > 1:304818/1‑76
ATATGGATCTGGTGGTTTGTGGTCAGTACACCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTG > 2:1033508/1‑76
TATGGATCTGGTGGTTTGTGGTCAGTACACCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGA > 1:1562972/1‑76
TATGGATCTGGTGGTTTGTGGTCAGTACACCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGA > 2:1492320/1‑76
TATGGATCTGGTGGTTTGTGGTCAGTACACCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGA > 1:350490/1‑76
TATGGATCTGGTGGTTTGTGGTCAGTACACCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGA > 1:257187/1‑76
ATGGATCTGGTGGTTTGTGGTCAGTACACCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGAT < 2:1399018/76‑1
GGATCTGGTGGTTTGTGGTCAGTACACCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGATCA > 2:658463/1‑76
GGATCTGGTGGTTTGTGGTCAGTACACCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGATCA > 1:1028149/1‑76
GATCTGGTGGTTTGTGGTCAGTACACCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGATCAA > 1:1793745/1‑76
ATCTGGTGGTTTGTGGTCAGTACACCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGATCAAC > 2:254203/1‑76
ATCTGGTGGTTTGTGGTCAGTACACCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGATCAAC > 2:821261/1‑76
CTGGTGGTTTGTGGTCAGTACACCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGATCAACAC > 2:580604/1‑76
|||||
GCGGCAGCGGCGACCTGGGCCAAGTTCTGGTCGATGCAATCAAGAAATACGATATGGATCTGGTGGTTTGTGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3571056‑3571129
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CACCACCAGGACTTCTGGAGCAAACTGATGTCTTCCGCACGTCAGCTGATCAACAC > REL606/3571130‑3571185
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
