Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A58 F1 I1 R1
|
18 |
55.3 |
3756050 |
96.8% |
3635856 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,612,971 |
T→C |
intergenic (‑32/+151) |
dctA ← / ← yhjK |
C4‑dicarboxylate transport protein/predicted diguanylate cyclase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,612,971 | 0 | T | C | 98.6%
| 906.6
/ ‑1.1
| 212 | intergenic (‑32/+151) | dctA/yhjK | C4‑dicarboxylate transport protein/predicted diguanylate cyclase |
| Reads supporting (aligned to +/- strand): ref base T (2/1); new base C (95/114); total (97/115) |
| Fisher's exact test for biased strand distribution p-value = 5.94e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.51e-01 |
Only 100 of 215 total aligned reads displayed.
GTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAAT > REL606/3612896‑3613042
|
gTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGt < 2:1184375/76‑1 (MQ=255)
gTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGt < 2:418704/76‑1 (MQ=255)
aGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAg < 2:921720/76‑1 (MQ=255)
aGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAg < 2:636570/76‑1 (MQ=255)
ggACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAgg > 1:1525309/1‑76 (MQ=255)
ggACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAgg < 1:611976/76‑1 (MQ=255)
ggACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAgg < 2:736625/76‑1 (MQ=255)
ggACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAgg < 1:138861/76‑1 (MQ=255)
aCCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGtt < 2:567631/76‑1 (MQ=255)
aCCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGtt < 1:1703907/76‑1 (MQ=255)
tGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATg > 1:960200/1‑76 (MQ=255)
aGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGt < 1:203136/76‑1 (MQ=255)
tAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTAc > 2:371716/1‑76 (MQ=255)
tAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTAc > 1:1065918/1‑76 (MQ=255)
tAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTAc > 1:734173/1‑76 (MQ=255)
aaaGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTAcc > 2:1234989/1‑76 (MQ=255)
aaaGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTAcc < 2:336209/76‑1 (MQ=255)
aaaGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTAcc > 1:15070/1‑76 (MQ=255)
aaGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCt < 1:1677397/76‑1 (MQ=255)
aGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTg < 2:528968/76‑1 (MQ=255)
ggCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGc < 2:1719262/76‑1 (MQ=255)
gCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCg < 1:1654951/76‑1 (MQ=255)
gCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCg < 2:980671/76‑1 (MQ=255)
gCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCg > 2:308470/1‑76 (MQ=255)
tAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGTAAGGTTATGGGGTACCTGCGGCCtt > 1:1013712/1‑76 (MQ=255)
tAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCtt < 2:902658/76‑1 (MQ=255)
tAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCtt > 2:1786162/1‑76 (MQ=255)
tAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCtt < 1:757756/76‑1 (MQ=255)
tAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCtt < 2:1032103/76‑1 (MQ=255)
aaCAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTaa < 2:1793328/76‑1 (MQ=255)
aaCAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTaa < 1:1591755/76‑1 (MQ=255)
aaCAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTaa < 1:230060/76‑1 (MQ=255)
aaCAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTaa < 1:1791812/76‑1 (MQ=255)
nagagagGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTaaaa > 1:566683/2‑76 (MQ=255)
cAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTaaaa > 1:1265565/1‑76 (MQ=255)
cAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTaaaa < 1:685522/76‑1 (MQ=255)
cAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTaaaa > 2:1854827/1‑76 (MQ=255)
agagagGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAAt > 1:779273/1‑76 (MQ=255)
agagagGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAAt > 2:412808/1‑76 (MQ=255)
gagagGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATa < 2:685056/76‑1 (MQ=255)
agagGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATaa < 1:927643/76‑1 (MQ=255)
agagGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATaa < 2:1392946/76‑1 (MQ=255)
agagGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATaa < 1:1456343/76‑1 (MQ=255)
agagGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTAACTGCGGCCTTAAAATaa > 1:420320/1‑76 (MQ=255)
gagGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAac < 2:823476/76‑1 (MQ=255)
gagGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAac > 2:1148599/1‑76 (MQ=255)
agGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAacn < 1:1084697/76‑2 (MQ=255)
ggTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAacac < 1:247202/76‑1 (MQ=255)
gTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACAcc > 2:1763515/1‑76 (MQ=255)
gTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACAcc < 1:331839/76‑1 (MQ=255)
ttttCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACcccc > 1:132939/1‑76 (MQ=255)
ttttCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACAccc < 2:15070/76‑1 (MQ=255)
tttCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCa > 1:586048/1‑76 (MQ=255)
ttCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAg < 2:1378760/76‑1 (MQ=255)
tCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGa > 1:1474301/1‑76 (MQ=255)
tCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGa > 1:519811/1‑76 (MQ=255)
cATAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGac < 2:1298418/76‑1 (MQ=255)
aTAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGaca > 1:1032856/1‑76 (MQ=255)
tAGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGacaa > 2:1213939/1‑76 (MQ=255)
aGGGTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGacaac < 1:141671/76‑1 (MQ=255)
gggTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGacaaca < 2:1460564/76‑1 (MQ=255)
ggTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACAt < 2:1675998/76‑1 (MQ=255)
ggTGTCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACAt > 1:239935/1‑76 (MQ=255)
tgtCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATca < 1:1845934/76‑1 (MQ=255)
gtCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATcac < 1:474201/76‑1 (MQ=255)
gtCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATcac > 1:1177997/1‑76 (MQ=255)
tCCTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATcaca < 1:1742871/76‑1 (MQ=255)
ccTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAg > 2:613380/1‑76 (MQ=255)
ccTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAg > 2:1404562/1‑76 (MQ=255)
ccTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAg < 1:897941/76‑1 (MQ=255)
cTTTAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGa < 2:1496693/76‑1 (MQ=255)
tttAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGaa > 1:1287173/1‑76 (MQ=255)
tttAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGaa < 1:796530/76‑1 (MQ=255)
tAGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAAt > 2:1542012/1‑76 (MQ=255)
aGTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATg > 2:1124672/1‑76 (MQ=255)
gTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGt > 2:1419535/1‑76 (MQ=255)
gTAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGt < 1:1202337/76‑1 (MQ=255)
tAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTa > 2:1817271/1‑76 (MQ=255)
tAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTa > 2:299866/1‑76 (MQ=255)
tAAAACCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAACGTa < 1:1031479/76‑1 (MQ=255)
aaaaCCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTAc > 1:880609/1‑76 (MQ=255)
aaaaCCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTAc > 2:144047/1‑76 (MQ=255)
aCCACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTg < 2:1713982/76‑1 (MQ=255)
ccACAGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTgg < 1:386501/76‑1 (MQ=255)
cacaGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGa > 1:726756/1‑76 (MQ=255)
cacaGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGa > 2:46352/1‑76 (MQ=255)
acaGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGAt < 2:1085396/76‑1 (MQ=255)
acaGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGAt > 2:602163/1‑76 (MQ=255)
caGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATc < 1:1786162/76‑1 (MQ=255)
caGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATc > 1:137331/1‑76 (MQ=255)
caGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATc < 2:227192/76‑1 (MQ=255)
aGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCa < 2:1102182/76‑1 (MQ=255)
aGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCa > 1:509733/1‑76 (MQ=255)
aGATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCa > 1:716329/1‑76 (MQ=255)
gATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCAt < 1:1357197/76‑1 (MQ=255)
gATCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCAt < 2:939787/76‑1 (MQ=255)
aTCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATa < 1:923744/76‑1 (MQ=255)
aTCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATa > 2:164212/1‑76 (MQ=255)
tCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATaa < 1:1223134/76‑1 (MQ=255)
tCTTGCAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATaa < 2:845138/76‑1 (MQ=255)
|
GTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGATCTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAAT > REL606/3612896‑3613042
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
