Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A120 F1 I1 R1
|
20 |
248.8 |
16334864 |
93.0% |
15191423 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC JC |
REL606 |
3,103,274 |
IS150 (–) +3 bp |
coding (128‑130/483 nt) |
ygiV ← |
predicted transcriptional regulator |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 2775877 | NA (NA) | 349 (1.420) |
116/150 |
0.1 |
98.5% |
noncoding (1/1443 nt) |
IS150 |
repeat region |
| ? | REL606 |
3103274 = |
5 (0.020) | coding (130/483 nt) |
ygiV |
predicted transcriptional regulator |
| * |
? |
REL606 |
= 3103276 | 5 (0.020) | 333 (1.360) |
123/150 |
0.0 |
98.5% |
coding (128/483 nt) |
ygiV |
predicted transcriptional regulator |
| ? | REL606 |
= 3894996 |
NA (NA) | noncoding (1443/1443 nt) |
IS150 |
repeat region |
Only 100 of 349 total aligned reads displayed.
TTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2775803‑2775877
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGCAATTCAGGGCTACAGCGGTGCGGCAACATCG > REL606/3103274‑3103348
TTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAT > 1:1257159/1‑76
TTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAT > 1:7514499/1‑76
TTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAT > 2:3700908/1‑76
TTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAT > 1:2083646/1‑76
TTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAT < 1:3477437/76‑1
TTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATC > 1:5085856/1‑76
TTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATC > 1:3012566/1‑76
TCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCT > 1:107325/1‑76
TCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCT < 1:6803157/76‑1
TCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCT < 1:5607489/76‑1
TCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCT > 2:3226359/1‑76
TCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCT < 2:5666212/76‑1
TCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCT < 1:2644399/76‑1
CAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTC < 1:3631307/76‑1
CAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTC < 2:4737504/76‑1
CAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTC > 2:6624955/1‑76
AAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCT > 1:4800763/1‑76
AAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTT > 2:6941691/1‑76
AAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTT > 2:7748925/1‑76
AAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTT > 2:3360126/1‑76
AAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTT > 1:1700186/1‑76
AAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTT < 2:3136225/76‑1
AGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTA > 2:2403176/1‑76
AGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTA < 2:5355256/76‑1
GGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACG < 2:8005821/76‑1
TATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCC > 1:4610411/1‑76
ATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCA > 1:5360942/1‑76
TTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCAC < 1:5407196/76‑1
TTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACAT > 1:2268244/1‑76
TGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACTCCACATG < 2:6206901/76‑1
GGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGA < 2:2920808/76‑1
GCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGGGCAGTACATCTCTTTACGCCACATGAT > 1:3204993/1‑76
CTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATA > 1:3376976/1‑76
TTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAA > 2:4868382/1‑76
TTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGAGCAGTACATCTCTTTACGCCACATGATAAA > 2:1376828/1‑76
TGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAAT > 1:1468402/1‑76
TGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAAT > 1:130791/1‑76
TGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAAT > 1:6694825/1‑76
GACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATT > 1:1079254/1‑76
CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTC > 1:7897013/1‑76
ATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCG < 2:7243538/76‑1
ATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCC > 1:3114131/1‑76
TTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCA < 1:6336932/76‑1
TTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCA > 1:4657489/1‑76
TTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCA > 2:2662177/1‑76
tGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACG > 2:7828107/2‑76
AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACG > 2:3474876/1‑76
AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACG > 1:6492467/1‑76
AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACG > 2:7612890/1‑76
AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACG > 1:7677221/1‑76
AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACG > 1:4719379/1‑76
AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACG > 1:1027778/1‑76
GGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACGCT < 1:6422826/76‑1
CTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTA > 1:7150525/1‑76
CTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTA > 1:7323185/1‑76
CTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTA > 2:3995627/1‑76
TATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAG < 2:4677524/76‑1
ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGT > 1:375726/1‑76
TTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTT > 2:1364948/1‑76
TTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTT < 1:3942489/76‑1
TTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTT > 2:14309/1‑76
TCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTG < 2:2025186/76‑1
TCCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTG < 2:226160/76‑1
CCATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGA > 1:7854012/1‑76
ATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGC > 1:2553359/1‑76
ATTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGC > 2:6827935/1‑76
TTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGCA < 1:966895/76‑1
TTTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGCA > 2:1105580/1‑76
TTCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGCAA > 2:6273505/1‑76
TCATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGCAAT > 1:4312793/1‑76
ATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGCAATTC < 2:3836972/76‑1
ATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGCAATTC < 2:2167202/76‑1
ATCGTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGCAATTC > 2:428344/1‑76
GTCCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGCAATTCAGG < 1:4476167/76‑1
CCAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGCAATTCAGGGC > 1:4142995/1‑76
CAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGCAATTCAGGGCT < 2:7700721/76‑1
CAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGCAATTCAGGGCT < 1:8090187/76‑1
CAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGCAATTCAGGGCT < 1:1502121/76‑1
CAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGCAATTCAGGGCT < 2:5586306/76‑1
CAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGCAATTCAGGGCT > 2:648882/1‑76
CAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGCAATTCAGGGCT < 2:8091501/76‑1
CAACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGCAATTCAGGGCT < 2:1557302/76‑1
AACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGCAATTCAGGGCTA < 1:4942480/76‑1
AACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGCAATTCAGGGCTA < 1:2936148/76‑1
ACAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGCAATTCAGGGCTAC < 2:4937756/76‑1
CAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGCAATTCAGGGCTACA > 1:6016626/1‑76
CAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGCAATTCAGGGCTACA > 1:3582955/1‑76
CAAAATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGCAATTCAGGGCTACA < 2:4072837/76‑1
AATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGCAATTCAGGGCTACAGCG < 1:7639915/76‑1
AATGGGTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGCAATTCAGGGCTACAGCG < 1:6979280/76‑1
GTGCAGTACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGCAATTCAGGGCTACAGCGGTGCG < 2:1447258/76‑1
CAGTACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGCAATTCAGGGCTACAGCGGTGCGGCA < 2:4425576/76‑1
AGTACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGCAATTCAGGGCTACAGCGGTGCGGCAA > 2:5260957/1‑76
GTACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGCAATTCAGGGCTACAGCGGTGCGGCAAC < 1:4847544/76‑1
GTACATCTCTCTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGCAATTCAGGGCTACCGCGGTGCGGCAAC < 2:18773/76‑1
TACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGCAATTCAGGGCTACAGCGGTGCGGCAACA > 1:1978223/1‑76
ACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGCAATTCAGGGCTACAGCGGTGCGGCAACAc > 2:6023232/1‑75
ACATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGCAATTCAGGGCTACAGCGGTGCGGCAACAT < 2:8149217/76‑1
CATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGCAATTCAGGGCTACAGCGGTGCGGCAACATC > 2:5934215/1‑76
ATCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGCAATTCAGGGCTACAGCGGTGCGGCAACATCG < 1:5806022/76‑1
TTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2775803‑2775877
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCTCTTTACGCCACATGATAAATTTCGCCACGCTGTAGTTGAGCAATTCAGGGCTACAGCGGTGCGGCAACATCG > REL606/3103274‑3103348
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
