Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A120 F1 I1 R1
|
20 |
248.8 |
16334864 |
93.0% |
15191423 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
REL606 |
3,147,777 |
Δ3 bp |
intergenic (+72/+5) |
rpoD → / ← ygjF |
RNA polymerase sigma factor/G/U mismatch‑specific DNA glycosylase |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 3147776 | 1 (0.000) | 195 (0.810) |
98/148 |
0.5 |
99.5% |
intergenic (+71/+8) |
rpoD/ygjF |
RNA polymerase sigma factor/G/U mismatch‑specific DNA glycosylase |
| ? | REL606 |
3147780 = |
1 (0.000) | intergenic (+75/+4) |
rpoD/ygjF |
RNA polymerase sigma factor/G/U mismatch‑specific DNA glycosylase |
Only 100 of 196 total aligned reads displayed.
ATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3147701‑3147776
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGAAACG > REL606/3147780‑3147853
agTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTG < 2:5543181/74‑1
TTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGT > 2:356685/1‑76
TTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGACCTCTGCACAAACGCCACCTTTTCGGTGT > 2:7659265/1‑76
TAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCTGTGTT > 2:2950433/1‑76
AATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTT > 2:4305484/1‑76
atgGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTT < 1:6396317/73‑1
ATCGGTAGGGCGGATCAGGCGTTACGCCGCACCCGGCACTAGGGCCTCTGCACAAACGCCACCTTTTTGGTGTTTT > 2:3162195/1‑76
TCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTT < 2:6914009/76‑1
CGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTT < 1:5735300/76‑1
CGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTT > 2:7342840/1‑76
CGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTT < 2:6201978/76‑1
GGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTA < 1:7722873/76‑1
GGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTA < 1:1383045/76‑1
GTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTAT > 2:7911162/1‑76
TAGGCCGGATCAGGCGTTACGCCGCACCCGGAACTAGGTCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATC > 2:3923640/1‑76
AGGCCGGATGAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCG < 1:7406199/76‑1
AGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCG > 2:5187136/1‑76
AGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCG > 2:5886374/1‑76
AGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCG < 1:5849266/76‑1
GGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGC > 1:7912308/1‑76
GCCGGATCAGGCTTTTTGCCGCACCCGGCACTAGGCCCTCTGCATAAACGCCATGTTTTCGGGGTTTTTTATCGCC > 2:213722/1‑76
CCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCC < 2:7738510/76‑1
CCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCC < 2:3421047/76‑1
CGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCA < 1:4176252/76‑1
CGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCA > 1:4648079/1‑76
CGGATCAGGCGTTACGCCGCACCAGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCA > 2:4144544/1‑76
ATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGC > 1:6770320/1‑76
ATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGC < 1:2080390/76‑1
TCAGGCGTTACGCCGCACCCGGCACTAGGGCCTCTGCACAAACGCAACCTTTTCGGTGTTTTTTATCGCCCACCCA > 2:1828647/1‑76
TCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCA > 2:1016332/1‑76
caaGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCAC < 2:1709902/73‑1
CAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCAC < 1:2382348/76‑1
CAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCAC > 1:7262684/1‑76
AGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACT > 2:2875835/1‑76
GGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTA > 1:8115063/1‑76
GGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTA > 1:7999569/1‑76
GGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTA > 1:6208845/1‑76
GCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTAC < 2:3463331/76‑1
GCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTAC < 1:3997363/76‑1
GCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTAC < 2:7145912/76‑1
CGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACC > 2:7456140/1‑76
GTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCA < 1:7253101/76‑1
TTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAG > 1:2321564/1‑76
tcCGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGC < 1:3439488/74‑1
TACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGC < 1:7937891/76‑1
TACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGC < 2:2145974/76‑1
CCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCT > 2:4644105/1‑76
ACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTC > 1:1316511/1‑76
ACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTC > 1:7538674/1‑76
CCCGGGACTTGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCC < 1:1539129/76‑1
CCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCC > 2:4440059/1‑76
CCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCC < 2:6069911/76‑1
CGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAG < 2:2438576/76‑1
CGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAG > 1:1861756/1‑76
CGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAG < 2:6409748/76‑1
CGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAG < 2:4536437/76‑1
GGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGC > 2:2575767/1‑76
CACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTC > 1:5395341/1‑76
CACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTC > 2:4090788/1‑76
CACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTC > 2:6488547/1‑76
ACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCG < 2:2106632/76‑1
CTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGC > 1:554610/1‑76
CTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGC > 1:6666356/1‑76
CTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGC > 2:5220864/1‑76
CTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGC > 2:156350/1‑76
CTAGGCCCTCGGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGC < 1:259386/76‑1
TAGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCG > 2:4856044/1‑76
AGGCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGA > 2:8163159/1‑76
gtCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGAT < 1:2208221/74‑1
GCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATA < 2:3995788/76‑1
GCCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATA > 2:1328623/1‑76
CCCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCGGTACCAGCGCCTGGTCCAGCTCGCGATAC < 1:7638909/76‑1
CCTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACG < 2:7832228/76‑1
CTCTGCACAAACGCCCCCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGC < 1:4965792/76‑1
CTCTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGC > 1:3915996/1‑76
CTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTT < 2:79255/76‑1
CTGCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCACCGCCTGGCCCAGCTCCGGATACGCTT > 1:3769921/1‑76
GCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCA < 1:115614/76‑1
GCACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCA > 1:4213110/1‑76
CACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAA < 1:4367751/76‑1
CACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAA < 2:1632341/76‑1
ACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAAC < 1:6872354/76‑1
ACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAAC < 2:3827703/76‑1
ACAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAAC > 1:4124183/1‑76
CAAACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACC < 1:5019712/76‑1
AACGCCACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAG > 2:1390281/1‑76
CGCCACCTTTTCGGTG‑TTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTT > 2:4557284/1‑76
CACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCT > 2:7487444/1‑76
ACCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTC > 1:4264084/1‑76
CCTTTTCGGTTTTTTTTGTCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCC < 1:2996100/76‑1
CCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCC < 2:2534597/76‑1
CCTTTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCC > 1:242041/1‑76
TTTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGT > 2:1453880/1‑76
TTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTG > 2:3441636/1‑76
TTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTG > 2:1545562/1‑76
TTCGGTGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTG < 1:651577/76‑1
TCGCTGTTTGTTACCGCCCCCGCACTCCCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGA < 1:2157460/76‑1
GGTGTTTTTTATCGCCCACGAACTACCAGCGCCGGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGAAA < 2:7012856/76‑1
TGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGAAACG > 2:6528350/1‑76
TGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGAAACG > 1:7077500/1‑76
ATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3147701‑3147776
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGAAACG > REL606/3147780‑3147853
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
