Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A18 F1 I1 R1
|
18 |
50.6 |
3235256 |
96.4% |
3118786 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,190,370 |
A→G |
L204P (CTG→CCG) |
yhaO ← |
predicted transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,190,370 | 0 | A | G | 100.0%
| 140.0
/ NA
| 35 | L204P (CTG→CCG) | yhaO | predicted transporter |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (13/22); total (13/22) |
TTCCCGCGAGCGATAAGAGATCACCATCGGGCTTAACGTCTGAATAAACAGAATCGACGTCAGGGTAAACGGCAGCGTAATAATGGCGTTTTTCACCAGCAGCCCCAGCGGCGGTAGCGAACCGACGTTATACAGATGCCACATT > REL606/3190297‑3190441
|
ttCCCGCGAGCGATAAGAGATCACCATCGGGCTTAACGTCTGAATAAACAGAATCGACGCCAGGGTAAACggcggc > 2:1582954/1‑76 (MQ=255)
tCCCGCGANCGATAAGAGATCACCATCGGGCTTAACGTCAGAATAAACAGAATCGACGTCAGGGTAAACGgcggcg < 1:1428334/76‑1 (MQ=255)
cgagcgaTAAGAGATCACCATCGGGCTTAACGTCTGAATAAACAGAATCGACGTCAGGGTAAGCGGCGGCGtaata < 1:109662/76‑1 (MQ=255)
gagcgaTAAGAGATCACCATCGGGCTTAACGTCTGAATAAACAGAATCGACGTCAGGGTAAACGGCGGCGtaataa > 2:1557890/1‑76 (MQ=255)
aTAAGAGGTCACCATCGGGCTTAACGTCTGAATAAACAGAATCGACGTCAGGGTAAACGGCGGCGTAATAATGGCg < 2:628749/76‑1 (MQ=255)
nagagATCACCATCGGGCTTAACGTCTGAATAAACAGAATCGACGTCAGGGTAAACGGCGGNGTAATAATGGCGtt > 2:218209/2‑76 (MQ=255)
aaGAGATCACCATCGGGCTTAACGTCTGAATAAACAGAATCGACGTCAGGGTAAACGGCGGCGTAATAATGGCGtt > 2:1145110/1‑76 (MQ=255)
aaGAGATCACCATCGGGCTTAACGTCTGAATAAACAGAATCGACGTCAGGGTAAACGGCGGCGTAATAATGGCGtt > 1:767208/1‑76 (MQ=255)
gaTCACCATCGGGNTTAACGTCTGAATANACNTAATCGACGTCAGGGTCAACGGCGGCGTAATAATGGCGTTTTTc < 2:1457775/76‑1 (MQ=255)
cACCATCGGGCTTAACGTCTGAATAAACAGAATCGACGTCAGGGTAAACGGCGGCGTAATAATGGCGTTTTTCAcc < 1:1160591/76‑1 (MQ=255)
aCCATCGGGCTTAACGTCTGAATAAACAGAATCGACGTCAGGGTAAACGGCGGCGTAATAATGGCGTTTTTCACca < 2:1179311/76‑1 (MQ=255)
ccATCGGGCTTAACGTCTGAATAAACAGAATCGACGTCAGGGTAAACGGCGGCGTAATAATGGCGTTTTTCACcag < 1:394283/76‑1 (MQ=255)
tCGGGCTTAACGTCTGAATAAACAGAATCGACGTCAGGGTAAACGGCGGCGTAGTAATGGCGTTTTTCACcagcag < 1:1173050/76‑1 (MQ=255)
tCGGGCTTAACGTCTGAATAAACAGAATCGACGTCAGGGTAAACGGCGGCGTAATAATGGCGTTTTTCACcagcag < 2:889523/76‑1 (MQ=255)
tCGGGCTTAACGTCTGAATAAACAGAATCGACGTCAGGGTAAACGGCGGCGTAATAATGGCGTTTTTCACcagcag < 2:86289/76‑1 (MQ=255)
ggCTTAACGTCTGAATAAACAGAATCGACGTCAGGGTAAACGGCGGCGTAATAATGGCGTTTTTCACCAGCAGccc > 1:822140/1‑76 (MQ=255)
ggCTTAACGTCTGAATAAACAGAATCGACGTCAGGGTAAACGGCGGCGTAATAATGGCGTTTTTCACCAGCAGccc < 2:167505/76‑1 (MQ=255)
ttAACGTCTGAATAAACAGAATCGACGTCAGGGTAAACGGCGGCGTAATAATGGCGTTTTTCACCAGTAGCCCCAg > 1:585527/1‑76 (MQ=255)
ttAACGTCTGAATAAACAGAATCGACGTCAGGGTAAACGGCGGCGTAATAATGGCGTTTTTCACCAGCAGCCCCAg < 2:1013109/76‑1 (MQ=255)
ttAACGTCTGAATAAACAGAATCGACGTCAGGGTAAACGGCGGCGTAATAATGGCGTTTTTCACCAGCAGCCCCAg > 2:1494851/1‑76 (MQ=255)
tAACGTCTGAATAAACAGAATCGACGTCAGGGTAAACGGCGGCGTAATAATGGCGTTTTTCACCAGCAGCCCCAgc < 2:373598/76‑1 (MQ=255)
aaCGTCTGAATAAACAGAATCGACGTCAGGGTAAACGGCGGCGTAATAATGGCGTTTTTCACCAGCAGCCCCAgcg < 1:1570210/76‑1 (MQ=255)
tCTGAATAAACAGAATCGACGTCAGGGTAAACGGCGGCGTAATAATGGCGTTTTTCACCAGCAGCCCCAGcggcgg < 2:1284195/76‑1 (MQ=255)
cTGAATAAACAGAATCGACGTCAGGGTAAACGGCGGCGTAATAATGGCGTTTTTCACCAGCAGCCCCAGCGGCGGt < 2:146611/76‑1 (MQ=255)
gAATAAACNGCATCGACGTNAGGGTAAACGGCGGCGTAATAANGGCGTTTTTCACCAGCAGCCCCAGCGGCGGTAg < 2:1355470/76‑1 (MQ=255)
gAATAAACAGAATCGACGTCGGNNTAAACGGCGGNNAAATAATGACGTTTCTCACCAGCAGCCCCAGCGGCGGTAg < 1:1462704/76‑1 (MQ=255)
gAATAAACAGAATCGACGTCAGGGTAAACGGCGGCGTAATAATGGCGTTTTTCACCAGCAGCCCCAGCGGCGGTAg < 2:155541/76‑1 (MQ=255)
aaaCAGAATCGACGTCATGGTATACGGCGGCGTAATAATGGCGTTTTTCACCAGAAGCCCCTGCGGCGGTAGCGaa > 2:239692/1‑76 (MQ=255)
aaCAGAATCGACGTCAGGGTAAACGGCGGCGTAATAATGGCGTTTTTCACCAGCAGCCCCAGCGGCGGTAGCGAAc < 2:1240101/76‑1 (MQ=255)
cGACGTCAGGGTAAACGGCGGCGTAATAATGGCGTTTTTCACCAGCAGCCCCAGCGGCGGTAGCGAACCGACGTta > 1:155053/1‑76 (MQ=255)
gACGTCAGGGTAAACGGTGGCGTAATATTGGCGTTTTTCACCAGCAGCCCCAGCGGCGGTAGCGAACCGACGTtat > 1:85188/1‑76 (MQ=255)
cGTCAGGGTAAACGGCGGCGTAATAATGGCGTTTTTCACCAGCAGCCCCAGCGGCGGTAGCGAACCGACGTTATAc > 1:661746/1‑76 (MQ=255)
gTCAGGGTAAACGNCGGCGTAATAATGGCGATTTTCACCAGCAGCTCCAGCGGCGGTAGCGAACCGACGTTATACa < 2:1475516/76‑1 (MQ=255)
tCAGGGTAAACGGCGGCGTAATAATGGCGTTTTTCACCAGCAGCCCCAGCGGCGGTAGCGAACCGACGTTATACAg < 1:934319/76‑1 (MQ=255)
cAGGGTAAACGGCGGCGTAATAATGGCGTTTTTCACCAGCAGCCCCAGCGGCGGGAGCGAACCGACGTTATACAGa > 1:1190014/1‑76 (MQ=255)
aaaCGGCGGCGTAATAATGGCGTTTTTCACCCGCAGCCCCNNCGGCGGTAGCNNAGCGACGTTATACAGATGCcac > 1:1454512/1‑76 (MQ=255)
aCGGCGGCGTAATAATGGCGTTTTTCACCAGCAGCCCCAGCGGCGGTAGCGAACCGACGTTATACAGATGCCACAt < 1:891957/76‑1 (MQ=255)
cggcggCGTAATAATGGCGTTTTTCACCAGCAGCCCCAGCGGCGGTAGCGAACCGACGTTATACAGATGCCACAtt > 2:477685/1‑76 (MQ=255)
|
TTCCCGCGAGCGATAAGAGATCACCATCGGGCTTAACGTCTGAATAAACAGAATCGACGTCAGGGTAAACGGCAGCGTAATAATGGCGTTTTTCACCAGCAGCCCCAGCGGCGGTAGCGAACCGACGTTATACAGATGCCACATT > REL606/3190297‑3190441
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
