Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F1 I1 R1
|
21 |
62.2 |
4089897 |
94.3% |
3856772 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
2,164,913 |
G→A |
T310M (ACG→ATG) |
yehU ← |
predicted sensory kinase in two‑component system with YehT |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 2,164,913 | 0 | G | A | 100.0%
| 202.2
/ NA
| 56 | T310M (ACG→ATG) | yehU | predicted sensory kinase in two‑component system with YehT |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (24/32); total (24/32) |
CGGTTTTTGGCTTCATACAATTTGATGGTGCCCATCACGCGCTGATTTTCGCCACGCAACGGAATTACCAGCGTCGACCCCAGTTTGCATTGCGGATGCAAAGAGCAACGATAAGGTACTTCGTTGCCATCAGCGTAGACC > REL606/2164841‑2164981
|
cGGTTTTTGGCTTCATACAATTTGATGGTGCCCATCTCGAGCTGATTTNCGCCACGCAACGGAATTACCAGCATCg < 1:1783801/76‑1 (MQ=255)
cGGTTTTTGGCTTCATACAATTTGATGGTGCCCATCACGCGCTGATTTTCGCCACGCAACGGAATTACCAGCATCg < 1:609775/76‑1 (MQ=255)
tttttGGCTTCATACAATTTGATGGTGCCCATCACGCGCTGATTTTCGCCACGCAACGGAATTACCAGCATCGAcc > 2:1202892/1‑76 (MQ=255)
tttGGCATCGTACCATTTCATGGTGCCCATCAGGCGCTGATTTTCGCCACGCAACGGAATANCCNGCACCGAcccc > 2:321886/1‑76 (MQ=255)
ttGGCTTCATACAATTTGATGGTGCCCATCACGCGCTGATTTTCGCCACGCAACGGAATTACCAGCATCGACCCCa > 2:1903820/1‑76 (MQ=255)
tGGCTTCATACAATTTGATGGTGCCCATCACGCGCTGATTTTCGCCACGCAACGGAATTACCAGCATCGACCCCAg < 2:1589304/76‑1 (MQ=255)
ggCTTCATACAATTTGATGGTGCCCATCACGCGCTGATTTTCGCCACGCAACGGAATTACCAGCATCGACCCCAGt < 1:795558/76‑1 (MQ=255)
ggCTTCATACAATTTGATGGTACCAACCAAGCGCCCATTATCGCCACGCAGCGGTATTACGAGCATCGCCCCCAGt > 1:2035185/1‑76 (MQ=255)
ggCTTCATACAATTTGATGGAGCCGATCACGCGCTGATTTTCGCCACGCAACGGAACTCCCTGCATCGACCCCAGt > 1:94795/1‑76 (MQ=255)
gCTTCATACAATTTGATGGTGCCCATCACGCGCTGATTTTCGCCACGCAACGGAATTACCAGCATCGACCCCAGtt > 2:110237/1‑76 (MQ=255)
ttCATACAATTTGATGGTGCCCATCACGCGCTGATTTTCGCCACGCAACGGAATTACCAGCATCGACCCCAGTTTg < 1:789463/76‑1 (MQ=255)
tCATACAATTTGATGGTGCCCATCACGCGCTGATTTTCGCCACGCAACGGAATTACCAGCATCGACCCCAGTTTGc > 2:1403133/1‑76 (MQ=255)
cATACAATTTGATGGTGCCCATCACGCGCTGATTTTCGCCACGCAACGGAATTACCAGCATCGACCCCAGTTTGCa > 2:256936/1‑76 (MQ=255)
aTACAATTTGATGGTGCCCATCACGCGCTGATTTTCGCCACGCAACGGAATTACCAGCATCGACCCCAGTTTGCAt > 1:1002268/1‑76 (MQ=255)
cAATTTGATGGTGCCCATCACGCGCTGATTTTCGCCACGCAACGGAATTACCAGCATCGACCCCAGTTTGCATTGc < 1:1229783/76‑1 (MQ=255)
aTTTGATGGTGCCCATCACGCGCTGATTTTCGCCACGCAACGGAATTACCAGCATCGACCCCAGTTTGCATTGCgg > 1:1224893/1‑76 (MQ=255)
aTTTGATGGTGCCCATCACGCGCTGATTTTCGCCACGCAACGGAATTACCAGCATCGACCCCAGTTTGCATTGCgg > 1:1279507/1‑76 (MQ=255)
ttGATGGTGCCCATCACGCGCTGATTTTCGCCACGCAACGGAATTACCAGCATCGACCCCAGTTTGCATTGCGGAt > 2:441605/1‑76 (MQ=255)
ttGATGGTGCCCATCACGCGCTGATTTTCGCCACGCAACGGAATTACCAGCATCGACCCCAGTTTGCATTGCGGAt > 2:1369033/1‑76 (MQ=255)
tGATGGTGCCCATCACGCGCTGATTTTCGCCACGCAACGGAATTACCAGCATCGACCCCAGTTTGCATTGCGGATg > 1:929855/1‑76 (MQ=255)
tGATGGTGCCCATCACGCGCTGATTTTCGCCACGCAACGGAATTACCAGCATCGACCCCAGTTTGCATTGCGGATg > 2:389505/1‑76 (MQ=255)
gATGGTGCCCATCACGCGCTGATTTTCGCCACGCAACGGAATTACCAGCATCGACCCCAGTTTGCATTGCGGATGc < 2:388677/76‑1 (MQ=255)
gATGGTGCCCATCACGCGCTGATTTTCGCCACGCAACGGAATTACCAGCATCGACCCCAGTTTGCATTGCGGATGc > 1:536238/1‑76 (MQ=255)
aTGGTGCCCATCACGCGCTGATTTTCGCCACGCAACGGAATTACCAGCATCGACCCCAGTTTGCATTGCGGATGCa < 1:1935846/76‑1 (MQ=255)
aTGGTGCCCATCACGCGCTGATTTTCGCCACGCAACGGAATTACCAGCATCGACCCCAGTTTGCATTACGGATGCa < 1:1891140/76‑1 (MQ=255)
ggTGCCCATCACGCGCTGATTTTCGCCACGCAACGGAATTACCAGCATAGACCCCAGTTTGCATTGCGGATGCaaa < 1:204393/76‑1 (MQ=255)
gTGCCCATCACGCGCTGATTTTCGCCACGCAACGGAATTACCAGCATCGACTCCAGTTTGCNTTGCGGATGCAAag < 1:4430/76‑1 (MQ=255)
gTGCCCATCACGCGCTGATTTTCGCCACGCAACGGAATTACCAGCATCGACCCCAGTTTGCATTGCGGATGCAAag < 2:484886/76‑1 (MQ=255)
gTGCCCATCACGCGCTGATTTTCGCCACGCAACGGAATTACCAGCATCGACCCCAGTTTGCATTGCGGATGCAAag < 2:1719398/76‑1 (MQ=255)
gTGCCCATCACGCGCTGATTTTCGCCACGCAACGGAATTACCAGCATCGACCCCAGTTTGCATTGCGGATGCAAag < 2:162552/76‑1 (MQ=255)
gTGCCCATCACGCGCTGATTTTCGCCACGCAACGGAATTACCAGCATCGACCCCAGTTTGCATTGCGGATGCAAag < 2:681018/76‑1 (MQ=255)
gTGCCCATCACGCGCTGATNTNCGCCACGNAACGGAATTACCACCATCGACNCCNGTGTGCATTGCGGATGCAAag < 2:298350/76‑1 (MQ=255)
gCCCATCACGCGCTGATTTTCGCCACGCAACGGAATTCCCAGCATCGACCCCAGTTTGCATTGCGGATGCAAagag > 1:1707871/1‑76 (MQ=255)
cccATCACGCGCTGATTTTCGCCACGCAACGGAATTACCAGCATCGACCCCAGTTTGCATTGCGGATGCAAAGAGc < 1:1159325/76‑1 (MQ=255)
cATCACGCGATGAATTTCGCCACGCAACGGANCTACGAGAACCGACCCCAGTTTGCATTGCGGANGCAAAGAGCaa > 1:239883/1‑76 (MQ=255)
tCACGCGCTGATTTTCGCCACGCAACGGAATTACCAGCATCGACCCCANTTTTCATTGCGGATGCAAAGAGCAACg < 2:3711/76‑1 (MQ=255)
tCACGCGCTGATTTTCGCCACGCAACGGAATTACCAGCATCGACCCCAGTTTGCATTGCGGATGCAAAGAGCAACg < 2:1797770/76‑1 (MQ=255)
cACGCGCTGATTTTCGCCACGCAACGGAATTACCAGCATCGACCCCAGTTTGCATTGCGGATGCAAAGAGCAACGa > 1:565156/1‑76 (MQ=255)
cgcgCTGATTTTCGCCACGCAACGGAATTACCAGCATCGACCCCAGTTTGCATCGCGGATGCAAAGAGCAACGATa > 2:159663/1‑76 (MQ=255)
gcgcTGATTTTCGCCACGCAACGGAATTACCAGCATCGACCCCAGTTTGCATTGCGGATGCAAAGAGGAACGATaa < 2:1454095/76‑1 (MQ=255)
gcgcTGATTTTCGCCACGCAACGGAATTACCAGCATCGACCCCAGTTTGCATTGCGGATGCAAAGAGCAACGATaa > 2:1514922/1‑76 (MQ=255)
gcTGATCTTCGCCACGCAACGGAATTACCAGCATCGACCCCAGTTTGCATTGCGGATGCAAAGAGCAACGATAAgg > 1:1865941/1‑76 (MQ=255)
gATTTTCGCCACGCAACGGAATTACCAGCATCGACCCCAGTTTGCATTGCGGATGCAAAGAGCAACGATAAGGTAc > 2:1718123/1‑76 (MQ=255)
gATTTTCGACACGCAACGGAATTACCACCATATACCCTAGTTGGCACTGCGGATGCGAAGTGGCACGATAAGGTAc < 1:1967900/76‑1 (MQ=255)
tCGCCACGCAACGGAATTACCAGCATCGACCCCAGTTTGCATTGCGGATGCAAAGAGCAACGATAAGGTACTTCGt < 1:1548374/76‑1 (MQ=255)
cGCCACGCAACGGAATTACCAGCATCGACCCCAGTTTGCATTGCGGATGCAAAGAGCAACGATAAGGTACTTCGtt > 2:1399312/1‑76 (MQ=255)
gCCACGCAACGGAATTACCAGCATCGACCCCAGTTTGCATTGCGGATGCAAAGAGCAACGATAAGGTACTTCGTTg < 2:445781/76‑1 (MQ=255)
ccACGCAACGGAATTACCAGCATCGACCCCAGTTTGCATTGCGGATGCAAAGAGCAACGATAAGGTACTTCGTTGc > 2:1711425/1‑76 (MQ=255)
aCGCAACGGAATTACCAGCATCGACCCCAGTTTGCACTGCGGATGCAANGAGCAACGATAAGGTACTTCGTTGCCa < 1:1796638/76‑1 (MQ=255)
gCAACGGAATTACCAGCATCGACCCCAGTTTGCATTGCGGATGCAAAGAGCAACGATAAGGTACTTCNTTGCCATc < 1:1953722/76‑1 (MQ=255)
aaCGGAATTACCAGCATCGACCCCAGTTTGCATTGCGGATGCAAAGAGCAACGATAAGGTACTTCGTTGCCATCAg < 2:1096012/76‑1 (MQ=255)
aaCGGAATTACCAGCATCGACCCCAGTTTGCATTGCGGATGCAAAGAGCAACGATAAGGTACTTCGTTGCCATCAg < 1:1328308/76‑1 (MQ=255)
aaCGGAATTACCAGCATCGACCCCAGTTTGCATTGCGGATGCAAAGAGCAACGATAAGGTACTTCGTTGCCATCAg < 1:742542/76‑1 (MQ=255)
ggAATTACCAGCATCGACCCCAGTTTGCATTGCGGATGCAAAGAGCAACGATAAGGTACTTCGTTGCCATCAGCGt < 1:748032/76‑1 (MQ=255)
ggAATTACCAGCATCGACCCCAGTTTGCATTGCGGATGCAAAGAGCAACGATAAGGTACTTCGTTGCCATCAGCGt < 2:1255930/76‑1 (MQ=255)
ggAATTACCAGCATCGACCCCACTTTGNGTNGGNGAGGCAANGAGCAATGATAAGGTACTTCGTTGCCATCAGCGt < 1:1770822/76‑1 (MQ=255)
aaTTACCAGCATCGACCCCAGTTTGCATTGCGGATGCAAAGAGCAACGATAAGGTACTTCGTTGCCATCAGCGTAg < 1:1445967/76‑1 (MQ=255)
tACCAGCATCGACCCCAGTTTGCATTGCGGATGCAAAGAGCAACGATAAGGTACTTCGTTGCCATCAGCGTAGAcc < 2:1135008/76‑1 (MQ=255)
tACCAGCATCGACCCCAGTTTGCATTGCGGATGCAAAGAGCAACGATAAGGTACTTCGTTGCCATCAGCGTAGAcc < 1:1843319/76‑1 (MQ=255)
tACCAGCATCGACCCCAGTTTGCATTGCGGATGCAAAGAGCAACGATAAGGTACTTCGTTGCCATCAGCGTAGAcc > 2:1893623/1‑76 (MQ=255)
|
CGGTTTTTGGCTTCATACAATTTGATGGTGCCCATCACGCGCTGATTTTCGCCACGCAACGGAATTACCAGCGTCGACCCCAGTTTGCATTGCGGATGCAAAGAGCAACGATAAGGTACTTCGTTGCCATCAGCGTAGACC > REL606/2164841‑2164981
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
