Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A73 F1 I1 R1
|
21 |
62.0 |
3993596 |
96.1% |
3837845 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,268,816 |
(A)8→7 |
intergenic (‑131/‑128) |
rplU ← / → ispB |
50S ribosomal protein L21/octaprenyl diphosphate synthase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,268,809 | 0 | A | . | 91.2%
| 226.6
/ 19.7
| 57 | intergenic (‑124/‑135) | rplU/ispB | 50S ribosomal protein L21/octaprenyl diphosphate synthase |
| Reads supporting (aligned to +/- strand): ref base A (2/3); new base . (18/34); total (20/37) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.23e-01 |
ATAAATATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTCCTAA > REL606/3268734‑3268879
|
ataAATATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACgaaga > 1:694197/1‑76 (MQ=255)
ataAATATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACgaaga > 1:694215/1‑76 (MQ=255)
ataAATATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACgaaga > 1:1683145/1‑76 (MQ=255)
ataAATATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACgaaga > 2:1078052/1‑76 (MQ=255)
ataAATATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACgaaga > 1:1353807/1‑76 (MQ=255)
taAATATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACgaagaa > 1:908496/1‑76 (MQ=255)
aaaTATTCACAATAGGGCGCGAATATTACGCAAAACGCGCGCCTTTGACAAGTGCTACAGTCAATACACGAAGaaa < 1:1958711/76‑1 (MQ=255)
aaaTATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGaaa > 1:761056/1‑76 (MQ=255)
aaaTATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGaaa < 1:1117945/76‑1 (MQ=255)
aaTATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGaaaa > 2:10550/1‑76 (MQ=255)
aaTATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGaaaa > 2:154912/1‑76 (MQ=255)
atatTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGaaaaa < 1:1887522/76‑1 (MQ=255)
atatTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGaaaaa < 2:1724253/76‑1 (MQ=255)
tatTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGaaaaaa > 1:1471665/1‑76 (MQ=255)
tatTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGaaaaaa > 1:1471673/1‑76 (MQ=255)
tatTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGaaaaaa > 1:378434/1‑76 (MQ=255)
ttCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGaaaaaaac < 1:1234336/76‑2 (MQ=255)
aaTAGGGCGCGAATATTACGCAAAACGCACGCCTTTAACAAGTGCTACAGTCAATACACGAAG‑AAAAAAACACAAc > 2:20369/1‑76 (MQ=255)
tAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACt < 1:1282837/76‑1 (MQ=255)
tAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAG‑AAAAAAACACAACtt < 2:273009/76‑1 (MQ=255)
tAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAG‑AAAAAAACACAACtt < 1:719492/76‑1 (MQ=255)
tAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAG‑AAAAAAACACAACtt > 1:1581320/1‑76 (MQ=255)
ggCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAG‑AAAAAAACACAACTTGTa < 2:1825225/76‑1 (MQ=255)
ggCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAG‑AAAAAAACACAACTTGTa < 2:1556314/76‑1 (MQ=255)
gcgcGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAG‑AAAAAAACACAACTTGTAc < 2:880659/76‑1 (MQ=255)
gcacgAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAG‑AAAAAAACACAACTTGTAc < 2:458894/73‑1 (MQ=255)
cgcgAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAG‑AAAAAAACACAACTTGTACg < 1:755040/76‑1 (MQ=255)
gcgAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACg > 1:690743/1‑76 (MQ=255)
cgAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAG‑AAAAAAACACAACTTGTACGGt < 2:500260/76‑1 (MQ=255)
cgAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAG‑AAAAAAACACAACTTGTACGGt < 2:1236737/76‑1 (MQ=255)
atatTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAG‑AAAGAAACACAACTTGTACGGTAAc < 2:1296808/76‑1 (MQ=255)
atTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAG‑AAAAAAACACAACTTGTACGGTAACGt > 1:994754/1‑76 (MQ=255)
tACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAG‑AAAAAAACACAACTTGTACGGTAACGttt > 2:1626662/1‑76 (MQ=255)
tACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAG‑AAAAAAACACAACTTGTACGGTAACGttt > 2:433090/1‑76 (MQ=255)
tACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAG‑AAAAAAACACAACTTGTACGGTAACGttt < 2:840801/76‑1 (MQ=255)
aCGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAG‑AAAAAAACACAACTTGTACGGTAACGTTTa < 1:348651/76‑1 (MQ=255)
aCGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAG‑AAAAAAACACAACTTGTACGGTAACGTTTa < 1:1662808/76‑1 (MQ=255)
cGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAG‑AAAAAAACACAACTTGTACGGTAACGTTTAt > 1:1337478/1‑76 (MQ=255)
cGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAG‑AAAAAAACACAACTTGTACGGTAACGTTTAt < 2:949829/76‑1 (MQ=255)
gCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAG‑AAAAAAACACAACTTGTACGGTAACGTTTATc < 1:816989/76‑1 (MQ=255)
cAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAG‑AAAAAAACACAACTTGTACGGTAACGTTTATCt < 2:1567615/76‑1 (MQ=255)
cAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAG‑AAAAAAACACAACTTGTACGGTAACGTTTATCt < 2:1583322/76‑1 (MQ=255)
aaaaCGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAG‑AAAAAAACACAACTTGTACGGTAACGTTTATCtg > 2:477609/1‑76 (MQ=255)
aaaaCGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAG‑AAAAAAACACAACTTGTACGGTAACGTTTATCtg < 1:1424650/76‑1 (MQ=255)
aaaCGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAG‑AAAAAAACACAACTTGTACGGTAACGTTTATCtgt > 2:1695102/1‑76 (MQ=255)
aaCGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAG‑AAAAAAACACAACTTGTACGGTAACGTTTATCtgtg < 2:1054775/76‑1 (MQ=255)
aaCGCACGCCTTTGACAAGTGCTACAGTAAATACACGAAG‑AAAAAAACACAACTTGTACGGTAACGTTTATCtgtg < 1:576802/76‑1 (MQ=255)
gcacgcCTTTGACAAGTGCTACAGTCAATACACGAAG‑AAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCa > 1:31767/1‑76 (MQ=255)
cacgcCTTTGACAAGTGCTACAGTCAATACACGAAG‑AAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCAt > 2:999972/1‑76 (MQ=255)
cacgcCTTTGACAAGTGCTACAGTCAATACACGAAG‑AAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCAt > 2:1395474/1‑76 (MQ=255)
acgcCTTTGACAAGTGCTACAGTCAATACACGAAG‑AAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCAtt < 1:69987/76‑1 (MQ=255)
acgcCTTTGACAAGTGCTACAGTCAATACACGAAG‑AAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCAtt < 2:1879698/76‑1 (MQ=255)
acgcCTTTGACAAGTGCTACAGTCAATACACGAAG‑AAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCAtt < 1:1801847/76‑1 (MQ=255)
gcCTTTGACAAGTGCTACAGTCAATACACGAAG‑AAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCAtttt > 1:157649/1‑76 (MQ=255)
ccTTTGACAAGTGCTACAGTCAATACACGAAG‑AAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCAttttt < 1:148466/76‑1 (MQ=255)
gACAAGTGCTACAGTCAATACACGAAG‑AAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGt > 2:1734194/1‑76 (MQ=255)
tGCTACAGTCAATACACGAAG‑AAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATc > 2:256008/1‑76 (MQ=255)
tGCTACAGTCAATACACGAAG‑AAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATc < 1:1046885/76‑1 (MQ=255)
cTACAGTCAATACACGAAG‑AAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCAc > 2:1719121/1‑76 (MQ=255)
cTACAGTCAATACACGAAG‑AAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCAc > 1:1687960/1‑76 (MQ=255)
cTACAGTCAATACACGAAG‑AAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCAc > 1:1687952/1‑76 (MQ=255)
aCAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCAcc > 1:143350/1‑76 (MQ=255)
aCAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCAcc > 2:871335/1‑76 (MQ=255)
aGTCAATACACGAAG‑AAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCta < 1:1826759/76‑1 (MQ=255)
aGTCAATACACGAAG‑AAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCta < 1:1467613/76‑1 (MQ=255)
gTCAATACACGAAG‑AAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCtat < 1:1209125/76‑1 (MQ=255)
tCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCtat < 1:147393/76‑1 (MQ=255)
cAATACACGAAG‑AAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTatat > 2:1785080/1‑76 (MQ=255)
cAATACACGAAG‑AAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTatat < 2:1645084/76‑1 (MQ=255)
cAATACACGAAG‑AAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTatat < 1:1065145/76‑1 (MQ=255)
aTACACGAAG‑AAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTc < 1:280704/76‑1 (MQ=255)
acacGAAG‑AAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTCCt < 1:1437875/76‑1 (MQ=255)
cacGAAGAAAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTCCt < 1:1283766/76‑1 (MQ=255)
cacGAAG‑AAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTCCTa < 2:586694/76‑1 (MQ=255)
cacGAAG‑AAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTCCTa < 1:213941/76‑1 (MQ=255)
acGAAG‑AAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTCCTaa < 1:1216426/76‑1 (MQ=255)
|
ATAAATATTCACAATAGGGCGCGAATATTACGCAAAACGCACGCCTTTGACAAGTGCTACAGTCAATACACGAAGAAAAAAAACACAACTTGTACGGTAACGTTTATCTGTGCCATTTTTTCAGTACAATCACCCTATATTCCTAA > REL606/3268734‑3268879
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
