Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A107 F1 I1 R1
|
19 |
326.9 |
20855348 |
93.1% |
19416328 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
4,504,889 |
(A)8→7 |
intergenic (+633/‑92) |
insB‑25 → / → ECB_04162 |
b4563(b4576); IS1 protein insB/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 4,504,882 | 0 | A | . | 96.6%
| 1281.0
/ 34.0
| 268 | intergenic (+626/‑99) | insB‑25/ECB_04162 | b4563(b4576); IS1 protein insB/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (4/5); new base . (109/150); total (113/155) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.69e-01 |
Only 100 of 301 total aligned reads displayed.
AGATAATGTTTTTAGTAAAAAAGAGTTGACTGAATATAATACAGCCTCTTCCTACATAAGAAGGAATGTGCTCACAAAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGTATTATGTATTTTATTTATATAGCAAAATA > REL606/4504807‑4504953
|
aGATAATGTTTTTAGTAAAAAAGAGTTGACTGAATATAATACAGCCTCTTCCTACATAAGAAGGAATGTGCTcaca > 1:2188520/1‑76 (MQ=255)
aTAATGTTTTTAGTAAAAAAGAGTTGACTGAATATAATACAGCCTCTTCCTACATAAGAAGGAATGTGCTCACaaa > 1:3181787/1‑76 (MQ=255)
tAATGTTTTTAGTAAAAAAGAGTTGACTGAATATAATACAGCCTCTTCCTACATAAGAAGGAATGTGCTCACaaaa > 1:10210062/1‑76 (MQ=255)
tAATGTTTTTAGTAAAAAAGAGTTGACTGAATATAATACAGCCTCTTCCTACATAAGAAGGAATGTGCTCACaaaa > 1:4400823/1‑76 (MQ=255)
tAATGTTTTTAGTAAAAAAGAGTTGACTGAATATAATACAGCCTCTTCCTACATAAGAAGGAATGTGCTCACaaaa > 2:8061263/1‑76 (MQ=255)
aTGTTTTTAGTAAAAAAGAGTTGACTGAATATAATACAGCCTCTTCCTACATAAGAAGGAATGTGCTCACaaaaaa < 1:8502505/76‑1 (MQ=255)
tGTTTTTAGTAAAAAAGAGTTGACTGAATATAATACAGCCTCTTCCTACATAAGAAGGAATGTGCTCACaaaaaaa < 1:3655824/76‑1 (MQ=255)
ttAGTAAAAAAGAGTTGACTGAATATAATACAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCAtt < 1:7650953/76‑1 (MQ=255)
ttAGTAAAAAAGAGTTGACTGAATATAATACAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCAtt < 1:2590136/76‑1 (MQ=255)
tAGTAAAAAAGAGTTGACTGAATATAATACAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTa < 1:106591/76‑1 (MQ=255)
tAGTAAAAAAGAGTTGACTGAATATAATACAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTa < 2:5221508/76‑1 (MQ=255)
aGTAAAAAAGAGTTGACTGAATATAATACAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAg > 2:1538/1‑76 (MQ=255)
aGTAAAAAAGAGTTGACTGAATATAATACAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAg > 2:3062388/1‑76 (MQ=255)
aGTAAAAAAGAGTTGACTGAATATAATACAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAg > 2:8773589/1‑76 (MQ=255)
gTAAAAAAGAGTTGATTGAATATAATACAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGt > 1:7452201/1‑76 (MQ=255)
aaaaaaGAGTTGACTGAATATAATACAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCt > 1:5727507/1‑76 (MQ=255)
aaaaaGAGTTGACTGAATATAATTCAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTg < 2:7725504/76‑1 (MQ=255)
aaaaaGAGTTGACTGAATATAATACAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTg < 2:9097371/76‑1 (MQ=255)
aaaaaGAGTTGACTGAATATAATACAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTg < 2:4932219/76‑1 (MQ=255)
aaaGAGTTGACTGAATATAATACAGCCTCTTCCTACATAAGAAGGAATGTGCTCACAAAAAAAACCATTAGTCTGc > 2:5056190/1‑76 (MQ=255)
aaGAGTTGACTGAATATAATACAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCtt < 1:8529377/76‑1 (MQ=255)
aaGAGTTGACTGAATATAATACAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCtt > 2:5277348/1‑76 (MQ=255)
agTTGACTGAATATAATACAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCt < 2:2671170/76‑1 (MQ=255)
ttGACTGAATATAATACAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGt > 2:8473012/1‑76 (MQ=255)
gACTGAATATAATACAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTc > 1:9471348/1‑76 (MQ=255)
gACTGAATATAATACAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTc > 1:5938197/1‑76 (MQ=255)
gACTGAATATAATACAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTc > 2:5259702/1‑76 (MQ=255)
cTGAATATAATACAGCCTCTTCCTACATAAGAAGGAATGTGCTCACAAAAAAAACCATTAGTCTGCTTCCTGTTCt < 2:6122936/76‑1 (MQ=255)
cTGAATATAATACAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCtt < 1:7199989/76‑1 (MQ=255)
tGAATATAATACAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTa > 1:7088092/1‑76 (MQ=255)
tGAATATAATACAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTa < 2:6884183/76‑1 (MQ=255)
tGAATATAATACAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTa < 1:1981426/76‑1 (MQ=255)
gAATATAATACAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTAc < 2:9307745/76‑1 (MQ=255)
gAATATAATACAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTAc < 1:13558/76‑1 (MQ=255)
aaTATAATACAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACa > 2:5975451/1‑76 (MQ=255)
aaTATAATACAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACa > 1:7342190/1‑76 (MQ=255)
aaTATAATACAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACa < 1:10008348/76‑1 (MQ=255)
atatAATACAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACaa < 1:9909062/76‑1 (MQ=255)
atatAATACAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACaa < 2:3559112/76‑1 (MQ=255)
ataataCAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACaata < 1:1606994/76‑1 (MQ=255)
ataataCAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACaata > 1:2950550/1‑76 (MQ=255)
taataCAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACaataa < 1:795611/76‑1 (MQ=255)
taataCAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACaataa < 2:455176/76‑1 (MQ=255)
taataCAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACaataa > 1:7759771/1‑76 (MQ=255)
taataCAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACaataa > 1:3420593/1‑76 (MQ=255)
aataCAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACaataat > 1:5450222/1‑76 (MQ=255)
ataCAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATc < 2:4622523/76‑1 (MQ=255)
ataCAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATc < 2:9539667/76‑1 (MQ=255)
ataCAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATc > 2:3206576/1‑76 (MQ=255)
taCAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCa < 2:10091009/76‑1 (MQ=255)
taCAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCa < 1:8908268/76‑1 (MQ=255)
aCAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAg < 2:7158616/76‑1 (MQ=255)
cAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAACCCATTAGTCTGCTTCCTGTTCTTACAATAATCAGt > 2:10215757/1‑76 (MQ=255)
cAGCCTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGt < 1:6015779/76‑1 (MQ=255)
ccTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGtatt < 2:3899253/76‑1 (MQ=255)
ccTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGtatt < 1:2363544/76‑1 (MQ=255)
ccTCTTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGtatt < 1:9994929/76‑1 (MQ=255)
ctctTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGtatta < 2:4458334/76‑1 (MQ=255)
tctTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGtattat > 2:1456650/1‑76 (MQ=255)
tctTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGtattat > 2:5733557/1‑76 (MQ=255)
ctTCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGTATTATg < 2:7604936/76‑1 (MQ=255)
ttCCTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGTATTATGt > 1:6627021/1‑76 (MQ=255)
ccTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGTATTATGtat > 2:127744/1‑76 (MQ=255)
ccTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGTATTATGtat > 1:6195442/1‑76 (MQ=255)
cTACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGTATTATGtatt > 2:6721500/1‑76 (MQ=255)
tACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGTATTATGtattt < 2:2472103/76‑1 (MQ=255)
tACATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGTATTATGtattt > 2:171682/1‑76 (MQ=255)
aCATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGTATTATGtatttt < 2:4300142/76‑1 (MQ=255)
aCATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGTATTATGtatttt < 2:1940562/76‑1 (MQ=255)
aCATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGTATTATGtatttt < 1:8618828/76‑1 (MQ=255)
aCATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGTATTATGtatttt > 1:4131327/1‑76 (MQ=255)
aCATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGTATTATGtatttt > 1:9661282/1‑76 (MQ=255)
cATAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGTATTATGtatttta < 2:6989199/76‑1 (MQ=255)
aTAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGTATTATGtattttat < 2:9463441/76‑1 (MQ=255)
aTAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGTATTATGtattttat > 1:3832401/1‑76 (MQ=255)
aTAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGTATTATGtattttat < 2:5503743/76‑1 (MQ=255)
tAAGAAGGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGTATTATGtattttatt < 1:4636259/76‑1 (MQ=255)
aagaagGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGTATTATGtattttattt > 2:1575424/1‑76 (MQ=255)
gaagGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGTATTATGTATTttatttat < 1:1137363/76‑1 (MQ=255)
aagGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGTATTATGtattttatt < 1:5289245/72‑1 (MQ=255)
aagGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGTATTATGTATTTTATTtata > 2:6455164/1‑76 (MQ=255)
aagGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGTATTATGTATTTTATTtata > 2:7997721/1‑76 (MQ=255)
agGAATTTGCTCAC‑ATAAAATCGATTAGTTTGCTTCCTGTTCTTACAATAATCAGTATTATGTATTTTGTTtatat > 2:3732496/1‑76 (MQ=255)
agGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGTATTATGTATTTTATTtatat < 2:4125943/76‑1 (MQ=255)
agGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGTATTATGTATTTTATTtatat < 1:3442376/76‑1 (MQ=255)
agGAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGTATTATGTATTTTATTtatat > 2:4764451/1‑76 (MQ=255)
ggAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGTATTATGTATTTTATTtatata < 1:4813591/76‑1 (MQ=255)
ggAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGTATTATGTATTTTATTtatata < 2:9758285/76‑1 (MQ=255)
gAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGTATTATGTATTTTATTTATATAg < 2:7248705/76‑1 (MQ=255)
gAATGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGTATTATGTATTTTATTTATATAg < 1:5036202/76‑1 (MQ=255)
aaTGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGTATTATGTATTTTATTTATATAGc > 1:6156193/1‑76 (MQ=255)
aaTGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGTATTATGTATTTTATTTATATAGc < 2:6168648/76‑1 (MQ=255)
aaTGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGTATTATGTATTTTATTTATATAGc < 1:9839721/76‑1 (MQ=255)
aTGTGCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGTATTATGTATTTTATTTATATAGCa < 1:3027173/76‑1 (MQ=255)
tgtgCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGTATTATGTATTTTATTTATATAGCaa < 1:9156571/76‑1 (MQ=255)
tgtgCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGTATTATGTATTTTATTTATATAGCaa < 2:2188520/76‑1 (MQ=255)
gtgCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGTATTATGTATTTTATTTATATAGCaaa < 1:499214/76‑1 (MQ=255)
gtgCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGTATTATGTATTTTATTTATATAGCaaa < 1:6951249/76‑1 (MQ=255)
gtgCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGTATTATGTATTTTATTTATATAGCaaa > 2:3462519/1‑76 (MQ=255)
tgCTCAC‑AAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGTATTATGTATTTTATTTATATAGCaaaa > 2:8533762/1‑76 (MQ=255)
|
AGATAATGTTTTTAGTAAAAAAGAGTTGACTGAATATAATACAGCCTCTTCCTACATAAGAAGGAATGTGCTCACAAAAAAAACCATTAGTCTGCTTCCTGTTCTTACAATAATCAGTATTATGTATTTTATTTATATAGCAAAATA > REL606/4504807‑4504953
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
