Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A106 F1 I1 R1
|
16 |
286.4 |
19211214 |
90.7% |
17424571 |
75.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
REL606 |
3,014,099 |
(ACAGGC)3→4 |
coding (680/1137 nt) |
ECB_02815 → |
Capsule polysaccharide export inner‑membrane protein kpsE |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
3014081 = | 23 (0.080) | 230 (0.980) |
85/124 |
0.1 |
95.8% |
coding (662/1137 nt) |
ECB_02815 |
Capsule polysaccharide export inner‑membrane protein kpsE |
| ? | REL606 |
= 3014086 |
1 (0.000) | coding (667/1137 nt) |
ECB_02815 |
Capsule polysaccharide export inner‑membrane protein kpsE |
Only 100 of 333 total aligned reads displayed.
AGCAAGTTCCGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3014168‑3014081
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgtgcctgtgCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTG < REL606/3014086‑3014012
GCAAGTTCCGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGC > 2:4059/1‑76
AGTTCCGCAGGTCCGCTTCCATCTGGCTCTTCTGGTCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTG > 2:8323701/1‑76
AGTTCCGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTG > 2:9473166/1‑76
AGTTCCGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTG > 2:3020451/1‑76
TCCGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGC < 2:187843/76‑1
TCCGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGC > 1:3195846/1‑76
CCGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCC > 2:7591671/1‑76
CGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCT < 1:1227059/76‑1
cgAGGCCCGCTCCCATCTGGACTTTCTGGCCCATCACCGTATTCACTAACGGGCTCGCCGCCTGTGCCTGTGCCTG < 2:7704278/74‑1
GCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTG > 1:3563714/1‑76
CAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGT < 1:1019047/76‑1
CAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGT > 2:1083815/1‑76
CAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGT < 1:2117956/76‑1
gcTCCGCTCCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGC < 2:5665471/74‑1
GGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGC > 1:5119485/1‑76
TCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCT < 1:7164512/76‑1
CCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTG < 1:2997442/76‑1
CCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTG > 2:1585573/1‑76
CCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTG < 2:9101493/76‑1
CCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTG > 2:6239597/1‑76
CCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTG < 2:6022228/76‑1
GCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTG < 2:3098332/76‑1
GCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTG < 1:3504383/76‑1
CTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGG > 2:4330429/1‑76
CATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCC < 2:1537539/76‑1
CATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCC < 1:1090090/76‑1
CATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCC > 1:8774320/1‑76
CATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCC > 1:6995021/1‑76
CATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCC < 1:5431002/76‑1
CATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCC > 1:1425427/1‑76
ATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCA > 1:1952204/1‑76
ATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCA > 1:9398078/1‑76
TCTGGATCTTCTGGCCCATCAGCGTATTCACTACCGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAG > 2:7070222/1‑76
TCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAG > 1:2500779/1‑76
TCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTT > 1:7104692/1‑76
CTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTG > 1:6724551/1‑76
TTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGT > 1:4397529/1‑76
TCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTT < 2:3745222/76‑1
TCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTT > 1:5282300/1‑76
TGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGT > 1:745480/1‑76
TGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGT > 1:1798754/1‑76
TGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGT > 2:3519976/1‑76
TGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGT > 1:3672768/1‑76
TGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGT > 1:4187334/1‑76
TGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGT > 1:8956313/1‑76
TGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGT > 1:4589245/1‑76
GGCCCCTCAGGGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTT < 2:5574776/76‑1
GGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTT > 2:4174585/1‑76
GGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTT > 2:8682301/1‑76
GGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTT > 2:2295979/1‑76
CCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGT > 2:8531484/1‑76
CCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTC > 1:824595/1‑76
CATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCT > 1:5604244/1‑76
acCAGCTTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTT < 1:775676/74‑1
ATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTT > 1:4031631/1‑76
ATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTT > 1:1693692/1‑76
TCAGGGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTG < 1:4835983/76‑1
TCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTG < 2:9167686/76‑1
AGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGAT < 1:7563358/76‑1
gtTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAA < 1:9038931/74‑1
CGTATTCCCTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAA < 1:8620222/76‑1
CGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAA > 1:918226/1‑76
TATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGA < 1:1894782/76‑1
TATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGA > 2:6732193/1‑76
ATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAG > 2:4465799/1‑76
ACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCA < 1:6696942/76‑1
ACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCA < 2:1349928/76‑1
TAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAAT > 2:8101291/1‑76
AACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATT > 2:1950551/1‑76
AACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATT > 1:8019332/1‑76
AACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATT > 1:852000/1‑76
AACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATT > 2:5496736/1‑76
AACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATT > 1:8716230/1‑76
AACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATT > 2:1754289/1‑76
CGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCC < 1:640384/76‑1
TCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTT < 2:2052159/76‑1
CGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTG < 2:7455811/76‑1
CGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTG < 1:2893427/76‑1
GCCGCCTGTGCCTGTGCCTTTGCCTGTGGATCCAGATCGTGGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTaga < 2:7441062/76‑4
CCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGC < 2:2570959/76‑1
CTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCG > 1:650576/1‑76
TGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCC > 1:4691013/1‑76
GCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCA < 1:1345766/76‑1
GCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCA < 1:6214469/76‑1
GCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCA < 1:524236/76‑1
CTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGA > 1:330005/1‑76
TGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGAC < 2:6298959/76‑1
CCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTG < 2:4589245/76‑1
CCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTG < 1:517935/76‑1
CCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTG < 1:6022827/76‑1
CTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGG < 2:5168899/76‑1
CTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGG > 2:2793987/1‑76
TGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGC > 2:8030523/1‑76
TGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGT > 1:2586916/1‑76
GCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTG < 2:4848647/76‑1
GCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTG < 2:4556685/76‑1
GCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTG > 2:695752/1‑76
GCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTG < 2:3672768/76‑1
GCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTG < 2:2434945/76‑1
GCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTG < 2:5268779/76‑1
AGCAAGTTCCGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3014168‑3014081
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgtgcctgtgCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTG < REL606/3014086‑3014012
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
