Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A137 F1 I1 R1
|
18 |
221.5 |
13936938 |
95.6% |
13323712 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
REL606 |
3,014,099 |
(ACAGGC)3→4 |
coding (680/1137 nt) |
ECB_02815 → |
Capsule polysaccharide export inner‑membrane protein kpsE |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
3014081 = | 20 (0.090) | 215 (1.210) |
96/124 |
0.0 |
96.3% |
coding (662/1137 nt) |
ECB_02815 |
Capsule polysaccharide export inner‑membrane protein kpsE |
| ? | REL606 |
= 3014086 |
0 (0.000) | coding (667/1137 nt) |
ECB_02815 |
Capsule polysaccharide export inner‑membrane protein kpsE |
Only 100 of 324 total aligned reads displayed.
AGCAAGTTCCGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3014168‑3014081
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgtgcctgtgCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTG < REL606/3014086‑3014012
CAAGTTCCGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCC > 2:5318915/1‑76
CAAGTTCCGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCC > 1:3899258/1‑76
CAAGTTCCGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCC > 1:21063/1‑76
AAGCTCCGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCCGCGTATTCACTAACGTGCTCGCCGCCTGTGCCT > 2:6341891/1‑76
AGTTCCGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTG > 1:2208703/1‑76
TTCCGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTG > 2:2070633/1‑76
TTCCGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTG > 1:2372563/1‑76
TCCGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGC > 1:3815843/1‑76
GCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTG > 2:1606226/1‑76
CAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGT > 1:5321503/1‑76
CAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGT > 2:4567370/1‑76
AGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTG > 1:3376837/1‑76
AGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTG > 2:4157325/1‑76
GTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCC > 2:3781843/1‑76
GTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCC > 2:1674945/1‑76
TCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCT > 1:5455646/1‑76
CCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTG < 2:5122649/76‑1
GCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTG > 2:2186899/1‑76
ctcCCATCGGGATCTCCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGG < 2:3123955/73‑1
CTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGG > 1:1352444/1‑76
TCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGAT > 1:1698630/1‑76
TCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGAT > 2:1920646/1‑76
TCCATCGGGATCTTCTGGCCAATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGAT < 2:1418111/76‑1
TCCATCGGGATCTTCGGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGAT < 1:6309968/76‑1
TCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAG > 1:2162513/1‑76
TCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAG > 1:6229918/1‑76
TCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAG < 2:791206/76‑1
CTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGA < 1:5255174/76‑1
CTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGA < 1:5061372/76‑1
TGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAA < 2:2487332/76‑1
GGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAAC > 1:6782199/1‑76
ATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGT > 1:3505541/1‑76
ATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGT > 2:6601632/1‑76
TCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTT < 2:2934730/76‑1
CTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTG < 1:1876448/76‑1
TCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTT > 1:4514914/1‑76
TCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTT < 1:2958987/76‑1
TGGCCCATCAGGTTATTCACTAACGTCCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGT < 1:1169171/76‑1
cCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTG < 2:3542355/75‑1
cCCCACCAGCGTATTCACTAACGTGCTCGCCGCCTGTACCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTG < 2:1831544/75‑1
CCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGT < 1:4284000/76‑1
CCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGT > 2:5751242/1‑76
CATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCT < 2:2567563/76‑1
TCAGCGTTTTCACTAACGTGCTCGCCGCCTGTGCCTCTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTG < 2:4334678/76‑1
TCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTG < 1:3749999/76‑1
AGCGTATTCAGTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGAT > 1:5439993/1‑76
GTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAG > 1:6946210/1‑76
GTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAG > 1:488409/1‑76
GTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAG > 1:6428097/1‑76
ATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAG < 1:1989004/76‑1
TTCACTATCGTGCTCGCCGCCTGTGCCTGTTCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGA < 1:1009294/76‑1
TTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGA > 1:6550503/1‑76
TCACTACCGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAG < 1:6139692/76‑1
CACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGC < 1:497036/76‑1
CACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGC > 1:5585832/1‑76
acaAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCA < 1:2840816/73‑1
CTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAA > 1:2552761/1‑76
CTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAA > 2:257911/1‑76
CTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAA > 2:4772683/1‑76
CTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAA > 2:5421826/1‑76
AACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATT < 2:6844401/76‑1
AACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATT > 1:1607124/1‑76
ACGTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTC > 1:6640508/1‑76
GTGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGGTCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCG < 1:3291628/76‑1
TGCTCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGC > 2:445831/1‑76
GCTCGCCTCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCT < 1:4048370/76‑1
tgGCCGCGTGTGCCTGTGCCTGTGCCTGTGGATTCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTT < 2:5543491/74‑1
TCGCCGCCTTTGCCTGTACCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTT < 1:4189566/76‑1
TCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTT < 1:5743179/76‑1
TCGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTT < 1:890894/76‑1
CGCCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTG < 1:2470902/76‑1
CCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCT > 1:3570323/1‑76
CCGCCTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCT > 2:3687109/1‑76
CTGTGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCG > 2:1001877/1‑76
TGCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCC > 2:2790386/1‑76
GCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCA < 2:3199928/76‑1
GCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCA < 2:4647286/76‑1
GCCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCA < 1:5868356/76‑1
CCTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAG < 1:4413754/76‑1
CTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGA > 2:396503/1‑76
CTGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGA > 1:604735/1‑76
TGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGAC > 2:2666100/1‑76
TGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGAC > 2:6712956/1‑76
TGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGAC > 2:4904781/1‑76
TGTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGAC < 1:2723879/76‑1
GTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTTGCGTCCAGACG > 1:2316038/1‑76
GTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACG < 2:1255912/76‑1
GTGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACG < 2:1063396/76‑1
GCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCT < 2:6947896/76‑1
CCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTG < 2:829620/76‑1
CTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGG < 2:5836693/76‑1
CTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGG > 2:5904388/1‑76
CTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGG > 2:6190760/1‑76
CTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGG < 2:4090107/76‑1
TGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGC > 1:6824697/1‑76
GTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCG < 1:510119/76‑1
GTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCG < 2:2247314/76‑1
GTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCG > 2:2451581/1‑76
GTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCG > 1:4600826/1‑76
GCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTG < 2:3377377/76‑1
AGCAAGTTCCGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGCCTGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3014168‑3014081
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgtgcctgtgCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTG < REL606/3014086‑3014012
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
