breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	annotation	gene	description
RA	124,938	A→G	I15V (ATT→GTT)	pdhR →	transcriptional regulator of pyruvate dehydrogenase complex
RA	433,525	T→A	I7N (ATC→AAC)	hupB →	HU, DNA‑binding transcriptional regulator, beta subunit
RA	475,161	C→A	G49C (GGC→TGC)	ybaL ←	predicted transporter with NAD(P)‑binding Rossmann‑fold domain
RA	1,329,516	C→T	H33Y (CAC→TAC)	topA →	DNA topoisomerase I
JC	1,733,297	(CGTATGAA)1→2	coding (333/1413 nt)	pykF →	pyruvate kinase
RA	2,131,466	(A)9→8	intergenic (‑125/+175)	gatY ← / ← fbaB	D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase
RA	2,164,658	A→T	I395N (ATC→AAC)	yehU ←	predicted sensory kinase in two‑component system with YehT
RA	2,193,779	G→T	L143I (CTT→ATT)	yeiB ←	conserved inner membrane protein
RA	2,213,517	C→T	A13T (GCT→ACT)	fruK ←	1‑phosphofructokinase
RA	2,655,307	T→C	N92S (AAT→AGT)	clpB ←	protein disaggregation chaperone
JC	3,014,099	(ACAGGC)3→4	coding (680/1137 nt)	ECB_02815 →	Capsule polysaccharide export inner‑membrane protein kpsE
RA	3,145,726	G→A	intergenic (+57/‑138)	dnaG → / → rpoD	DNA primase/RNA polymerase sigma factor
RA	3,326,566	A→T	D67E (GAT→GAA)	mreD ←	cell wall structural complex MreBCD transmembrane component MreD
RA	3,762,741	A→T	K662I (AAA→ATA)	spoT →	bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase
RA	3,875,632	(T)7→8	intergenic (‑66/+287)	glmU ← / ← atpC	bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon
MC JC	3,894,997	Δ6,934 bp	IS150‑mediated	rbsD–[yieO]	rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO]
RA	4,163,752	T→A	I966N (ATC→AAC)	rpoB →	DNA‑directed RNA polymerase subunit beta
JC JC	4,524,522	IS186 (+) +6 bp	coding (494‑499/549 nt)	fimA →	major type 1 subunit fimbrin (pilin)