Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A95 F1 I1 R1 16 38.4 2546724 96.0% 2444855 75.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC REL606 4,168,970 Δ3 bp coding (4010‑4012/4224 nt) rpoC → DNA‑directed RNA polymerase subunit beta'

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ REL606 4168970 4168972 3 33 [0] [0] 33 rpoC DNA‑directed RNA polymerase subunit beta'

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 41689690 (0.000)33 (0.850) 24/148 0.6 100% coding (4009/4224 nt) rpoC DNA‑directed RNA polymerase subunit beta'
?REL606 4168973 = 0 (0.000)coding (4013/4224 nt) rpoC DNA‑directed RNA polymerase subunit beta'

GATK/CNVnator alignment

N/A