Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A25 F999 I0 R1
|
111 |
24.8 |
2365438 |
97.5% |
2306302 |
48.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,979,769 |
C→T |
A390V (GCG→GTG) |
wzyE → |
enterobacterial common antigen polymerase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,979,769 | 0 | C | T | 100.0%
| 230.6
/ NA
| 58 | A390V (GCG→GTG) | wzyE | enterobacterial common antigen polymerase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (29/29); total (29/29) |
CTAATCGCTATAAAGCTGCGATATTGCACAGTTTCTGCTTTGGGGCGATCTTCAATATGATCGTGCTGGCGCGTGAAGGGCTGGATTCGT > NC_000913/3979724‑3979813
|
cTAATCGCTATAAAGCTGCGATATTGCACAGTTTCTGCTTTGGGGTGAt < 1:1178256/49‑1 (MQ=255)
cTAATCGCTATAAAGCTGCGATATTGCACAGTTTCTGCTTTGGGGTGAt < 1:536478/49‑1 (MQ=255)
cTAATCGCTATAAAGCTGCGATATTGCACAGTTTCTGCTTTGGGGTGAt > 1:466136/1‑49 (MQ=255)
cTAACCGCTATAAAGCTGCGATATTGCACAGTTTCTGCTTTGGGGTGAt < 1:330724/49‑1 (MQ=39)
tAATCGCTATAAAGCTGCGATATTGCACAGTTTCTGCTTTGGGGTGATc > 1:2328901/1‑49 (MQ=255)
tAATCGCTATAAAGCTGCGATATTGCACAGTTTCTGCTTTGGGGTGATc > 1:532522/1‑49 (MQ=255)
aTCGCTATAAAGCTGCGATATTGCACAGTTTCTGCTTTGGGGTGATc < 1:589632/47‑1 (MQ=255)
aTCGCTATAAAGCTGCGATATTGCACAGTTTCTGCTTTGGGGTGATc < 1:2053292/47‑1 (MQ=255)
tCGCTATAAAGCTGCGATATTGCACAGTTTCTGCTTTGGGGTGATCTTc < 1:747876/49‑1 (MQ=255)
tCGCTATAAAGCTGCGATATTGCACAGTTTCTGCTTTGGGGTGATCTTc < 1:717613/49‑1 (MQ=255)
cGCTATAAAGCTGCGATATTGCACAGTTTCTGCTTTGGGGTGATCTTc > 1:155923/1‑48 (MQ=255)
gCTATAAAGCTGCGATATTGCACAGTTTCTGCTTTGGGGTGATCTTCaa > 1:402087/1‑49 (MQ=255)
cTATAAAGCTGCGATATTGCACAGTTTCTGCTTTGGGGTGATCTTCAat < 1:1536984/49‑1 (MQ=255)
tataAAGCTGCGATATTGCACAGTTTCTGCTTTGGGGTGATCTTCAata > 1:429859/1‑49 (MQ=255)
tataAAGCTGCGATATTGCACAGTTTCTGCTTTGGGGTGATCTTCAata > 1:1725707/1‑49 (MQ=255)
ataAAGCTGCGATATTGCACAGTTTCTGCTTTGGGGTGATCTTCAatat > 1:1663907/1‑49 (MQ=255)
ataAAGCTGCGATATTGCACAGTTTCTGCTTTGGGGTGATCTTCAatat > 1:1779645/1‑49 (MQ=255)
taAAGCTGCGATATTGCACAGTTTCTGCTTTGGGGTGATCTTCAatat > 1:1707114/1‑48 (MQ=255)
taAAGCTGCGATATTGCACAGTTTCTGCTTTGGGGTGATCTTCAatat > 1:2097595/1‑48 (MQ=255)
taAAGCTGCGATATTGCACAGTTTCTGCTTTGGGGTGATCTTCAatat < 1:1048123/48‑1 (MQ=255)
aaaGCTGCGATATTGCACAGTTTCTGCTTTGGGGTGATCTTCAATATGa > 1:1025290/1‑49 (MQ=255)
aaGCTGCGATATTGCACAGTTTCTGCTTTGGGGTGATCTTCAATATGa < 1:165521/48‑1 (MQ=255)
aaGCTGCGATATTGCACAGTTTCTGCTTTGGGGTGATCTTCAATATGa < 1:631170/48‑1 (MQ=255)
aaGCTGCGATATTGCACAGTTTCTGCTTTGGGGTGATCTTCAATATGAt < 1:1998650/49‑1 (MQ=255)
gCTGCGATATTGCACAGTTTCTGCTTTGGGGTGATCTTCAATATGATCg < 1:932539/49‑1 (MQ=255)
cTGCGATATTGCACAGTTTCTGCTTTGGGGTGATCTTCAATATGATCGt < 1:1050693/49‑1 (MQ=255)
cTGCGATATTGCACAGTTTCTGCTTTGGGGTGATCTTCAATATGATCGt > 1:587981/1‑49 (MQ=255)
cTGCGATATTGCACAGTTTCTGCTTTGGGGTGATCTTCAATATGATCGt < 1:2111567/49‑1 (MQ=255)
cTGCGATATTGCACAGTTTCTGCTTTGGGGTGATCTTCAATATGATCGt > 1:23328/1‑49 (MQ=255)
cTGCGATATTGCACAGTTTCTGCTTTGGGGTGATCTTCAATATGATCGt < 1:1586929/49‑1 (MQ=255)
cTGCGATACTGCACAGTTTCTGCTTTGGGGTGATCTTCAATATGATCGt < 1:367290/49‑1 (MQ=255)
tGCGATATTGCACAGTTTCTGCTTTGGGGTGATCTTCAATATGATCGTg > 1:1986852/1‑49 (MQ=255)
cGATATTGCACAGTTTCTGCTTTGGGGTGATCTTCAATATGATCGTg < 1:24850/47‑1 (MQ=255)
gATATTGCACAGTTTCTGCTTTGGGGTGATCTTCAATATGATCGTGCTg < 1:551913/49‑1 (MQ=255)
atatTGCACAGTTTCTGCTTTGGGGTGATCTTCAATATGATCGTGCTgg < 1:318295/49‑1 (MQ=255)
atatTGCACAGTTTCTGCTTTGGGGTGATCTTCAATATGATCGTGCTgg < 1:847994/49‑1 (MQ=255)
tatTGCACAGTTTCTGCTTTGGGGTGATCTTCAATATGATCGTGCTGgc < 1:76758/49‑1 (MQ=255)
atTGCACAGTTTCTGCTTTGGGGTGATCTTCAATATGATCGTGCTGgcg > 1:2122664/1‑49 (MQ=255)
atTGCACAGTTTCTGCTTTGGGGTGATCTTCAATATGATCGCGCTGgcg > 1:1622562/1‑49 (MQ=39)
ttGCACAGTTTCTGCTTTGGGGTGATCTTCAATATGATCGTGCTGgcgc > 1:200423/1‑49 (MQ=255)
ttGCACAGTTTCTGCTTTGGGGTGATCTTCAATATGATCGTGCTGgcg < 1:503711/48‑1 (MQ=255)
cacaGTTTCTGCTTTGGGGTGATCTTCAATATGATCGTGCTGGCGCGt > 1:67236/1‑48 (MQ=255)
acaGTTTCTGCTTTGGGGTGATCTTCAATATGATCGTGCTGGCGCGTg > 1:611991/1‑48 (MQ=255)
aGTTTCTGCTTTGGGGTGATCTTCAATATGATCGTGCTGGCGCGTGAAg < 1:255098/49‑1 (MQ=255)
tttCTGCTTTGGGGTGATCTTCAATATGATCGTGCTGGCGCGTGAAggg < 1:911939/49‑1 (MQ=255)
tttCTGCTTTGGGGTGATCTTCAATATGATCGTGCTGGCGCGTGAAggg > 1:47152/1‑49 (MQ=255)
tttCTGCTTTGGGGTGATCTTCAATATGATCGTGCTGGCGCGTGAAggg > 1:2323087/1‑49 (MQ=255)
tCTGCTTTGGGGTGATCTTCAATATGATCGTGCTGGCGCGTGAAGGGCt > 1:300335/1‑49 (MQ=255)
cTGCTTTGGGGTGATCTTCAATATGATCGTGCTGGCGCGTGAAGGGCt < 1:395192/48‑1 (MQ=255)
cTTTGGGGTGATCTTCAATATGATCGTGCTGGCGCGTGAAGGGCTGGAt > 1:2159246/1‑49 (MQ=255)
tttGGGGTGATCTTCAATATGATCGTGCTGGCGCGTGAAGGGCTGGAtt > 1:1058174/1‑49 (MQ=255)
tGGGGTGATCTTCAATATGATCGTGCTGGCGCGTGAAGGGCTGGAtt < 1:701267/47‑1 (MQ=255)
tGGGGTGATCTTCAATATGATCGTGCTGGCGCGTGAAGGGCTGGATTc < 1:1670877/48‑1 (MQ=255)
tGGGGTGATCTTCAATATGATCGTGCTGGCGCGTGAAGGGCTGGATTCg > 1:2098353/1‑49 (MQ=255)
tGGGGTGATCTTCAATATGATCGTGCTGGCGCGTGAAGGGCTGGATTCg > 1:2107026/1‑49 (MQ=255)
tGGGGTGATCTTCAATATGATCGTGCTGGCGCGTGAAGGGCTGGATTCg > 1:1391745/1‑49 (MQ=255)
ggggTGATCTTCAATATGATCGTGCTGGCGCGTGAAGGGCTGGATTCGt > 1:1652853/1‑49 (MQ=255)
gggTGATCTTCAATATGATCGTGCTGGCGCGTGAAGGGCTGGATTCGt < 1:258942/48‑1 (MQ=255)
|
CTAATCGCTATAAAGCTGCGATATTGCACAGTTTCTGCTTTGGGGCGATCTTCAATATGATCGTGCTGGCGCGTGAAGGGCTGGATTCGT > NC_000913/3979724‑3979813
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
