Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A26 F999 I0 R1
|
111 |
30.9 |
2867207 |
97.9% |
2806995 |
48.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_000913 |
3,618,992 |
Δ6,688 bp |
|
rhsB–[yhhJ] |
rhsB, yhhH, yhhI, [yhhJ] |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
3618992 |
3625679 |
6688 |
21 [0] |
[0] 21 |
rhsB–[yhhJ] |
rhsB,yhhH,yhhI,[yhhJ] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 3618991 | 0 (0.000) | 21 (0.580) |
18/94 |
0.4 |
100% |
intergenic (+2/‑201) |
nikR/rhsB |
DNA‑binding transcriptional repressor NikR/rhs element protein RhsB |
| ? | NC_000913 |
3625680 = |
NA (NA) | coding (1124/1125 nt) |
yhhJ |
ABC transporter family protein YhhJ |
GATK/CNVnator alignment
N/A
