Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A21 F999 I0 R1
|
108 |
30.5 |
2257647 |
98.2% |
2217009 |
49.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_000913 |
3,618,992 |
Δ6,688 bp |
|
rhsB–[yhhJ] |
rhsB, yhhH, yhhI, [yhhJ] |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
3618992 |
3625679 |
6688 |
28 [0] |
[0] 28 |
rhsB–[yhhJ] |
rhsB,yhhH,yhhI,[yhhJ] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 3618991 | 0 (0.000) | 27 (0.920) |
23/96 |
0.1 |
100% |
intergenic (+2/‑201) |
nikR/rhsB |
DNA‑binding transcriptional repressor NikR/rhs element protein RhsB |
| ? | NC_000913 |
3625680 = |
NA (NA) | coding (1124/1125 nt) |
yhhJ |
ABC transporter family protein YhhJ |
GATK/CNVnator alignment
N/A
