Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F999 I0 R1 75 85.3 6433650 96.2% 6189171 49.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 4,299,628 Δ25,538 bp [mdtP]–[phnC] 27 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 4299628 4325165 25538 71 [0] [0] 70 [mdtP]–[phnC] [mdtP],mdtO,mdtN,ytcA,yjcS,alsK,alsE,alsC,alsA,alsB,alsR,rpiB,yjdP,phnP,phnO,phnN,phnM,phnL,phnK,phnJ,phnI,phnH,phnG,phnF,phnE,phnD,[phnC]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 42996270 (0.000)66 (0.790) 44/98 0.1 100% coding (1404/1467 nt) mdtP putative multidrug efflux pump outer membrane channel
?NC_000913 4325166 = 0 (0.000)intergenic (‑1/+132) phnC/yjdN phosphonate ABC transporter ATP binding subunit/conserved protein YjdN

GATK/CNVnator alignment

N/A