Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A19 F999 I0 R1
|
91 |
166.1 |
11695708 |
96.8% |
11321445 |
49.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_000913 |
3,761,993 |
Δ8,250 bp |
|
rhsA–yibV |
rhsA, yibA, yibJ, yibG, yibS, yibV |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
3761993 |
3770242 |
8250 |
190 [0] |
[0] 190 |
rhsA–yibV |
rhsA,yibA,yibJ,yibG,yibS,yibV |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 3761992 | 0 (0.000) | 185 (1.250) |
84/96 |
0.0 |
100% |
intergenic (‑37/‑191) |
yibF/rhsA |
glutathione transferase‑like protein YibF/rhs element protein RhsA |
| ? | NC_000913 |
3770243 = |
0 (0.000) | coding (1137/1137 nt) |
yibH |
inner membrane protein YibH |
GATK/CNVnator alignment
N/A
