Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F412 I3 R1
|
53 |
201.3 |
10250884 |
92.1% |
9441064 |
100.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,661,667 |
T→C |
R418R (CGT→CGC) |
mdtF → |
anaerobic multidrug efflux transporter, ArcA‑regulated |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,661,667 | 0 | T | C | 99.5%
| 630.9
/ ‑4.8
| 183 | R418R (CGT→CGC) | mdtF | anaerobic multidrug efflux transporter, ArcA‑regulated |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (97/85); total (97/86) |
| Fisher's exact test for biased strand distribution p-value = 4.70e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.00e-01 |
Only 100 of 185 total aligned reads displayed.
TCGGTTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCC > NC_000913/3661570‑3661763
|
tcggtTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCgcgt < 1:230550/100‑1 (MQ=255)
ggtTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCa < 1:4924616/100‑1 (MQ=255)
ggtTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCa > 1:3649168/1‑100 (MQ=255)
gtTTCACCATCAACACGTTGAGTATGTTCGGGATGGTTCTGGCGATCGGGTTACTGGTGGATGACCCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCAt < 1:4796988/100‑1 (MQ=25)
gtTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCAt > 1:4821283/1‑100 (MQ=255)
ttCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTg > 1:1844620/1‑100 (MQ=255)
tCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGc < 1:1939880/100‑1 (MQ=255)
cACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGCGACCGTCGAGCGCGTCATTGCg > 2:734839/1‑100 (MQ=255)
cACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCg < 2:4070024/100‑1 (MQ=255)
aTCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAg < 1:4275078/100‑1 (MQ=255)
tCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGa < 1:833512/100‑1 (MQ=255)
aaCACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATa < 2:1175334/100‑1 (MQ=255)
aaCACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATa < 1:4238639/100‑1 (MQ=255)
acacGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATaa > 1:1096273/1‑100 (MQ=255)
tGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTAcn < 1:71/100‑2 (MQ=255)
tGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTAcc > 1:285691/1‑100 (MQ=255)
gACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCCAccg > 2:3531989/1‑100 (MQ=255)
cTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCTCGTCATTGCGGAAGATAAGCTAccgcc < 2:4210248/100‑1 (MQ=255)
cTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTAccgcc < 1:1058151/100‑1 (MQ=255)
tgtgCGGGATGGTGCTGACGATAGGGTTACTGGTGGATGACGCCATCATGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCgaa > 2:1011343/1‑100 (MQ=37)
tGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCgaa < 2:2469952/100‑1 (MQ=255)
gTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCgaag < 2:1732721/100‑1 (MQ=255)
gTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCgaag > 1:2083978/1‑100 (MQ=255)
gTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCgaag < 1:1449587/100‑1 (MQ=255)
gTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATAACGCCATAGTGGTGGTGGAGAACGTCGCGCGCGTCATTGCGGAAGATAAGCTACCGCCcaag < 2:29348/100‑1 (MQ=25)
gggATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCgaaggaag < 1:2845605/100‑1 (MQ=255)
gggATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCgaaggaag < 1:4453508/100‑1 (MQ=255)
ggATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGc < 2:2080141/100‑1 (MQ=255)
ggATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGc > 2:687638/1‑100 (MQ=255)
gATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCg < 1:1703204/100‑1 (MQ=255)
ggTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACg < 1:257058/100‑1 (MQ=255)
ggTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACg < 1:3184966/100‑1 (MQ=255)
tGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCa > 1:3714244/1‑100 (MQ=255)
tGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCa > 1:3714655/1‑100 (MQ=255)
gCTGTCGATAGGGGTACTGGTGGATGACGCCAGCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCTGAAGGGAGCGACGCAt > 2:958260/1‑100 (MQ=37)
cTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATa < 1:3013479/100‑1 (MQ=255)
gCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAAt < 1:1567419/100‑1 (MQ=255)
cGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATc > 1:3856725/1‑100 (MQ=255)
cGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATc > 2:1408000/1‑100 (MQ=255)
gATAGGGTTACTGGTGGATGACGCCATCGTGGTGGGGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCg < 1:3314712/100‑1 (MQ=255)
tcgggTCACTGCTGGATGCCCTCCTCGTGCTGGTGGAGACCGTCGAGCGCGTCATTGCGGAAGCTAAGCTACCGCCGAAGGAAGCGACGCATAAATCgct < 2:2789186/98‑3 (MQ=255)
aGGGTTACTGGTGGATGACGTCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATg < 1:4917835/100‑1 (MQ=255)
gggTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATgg < 1:2717897/100‑1 (MQ=255)
gggTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATgg > 1:2382866/1‑100 (MQ=255)
ggTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATggg > 1:1238363/1‑100 (MQ=255)
ttACTGGTGGATGACGCCCTCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGc < 1:4629097/100‑1 (MQ=255)
ttACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGc < 2:2700327/100‑1 (MQ=255)
ttACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGc < 2:1242455/100‑1 (MQ=255)
aCTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAg > 2:1908941/1‑100 (MQ=255)
cTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTGCCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGa > 2:4619419/1‑100 (MQ=255)
cTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGa > 1:63642/1‑100 (MQ=255)
ggtggATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATc > 2:395935/1‑100 (MQ=255)
ggtggATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATc > 1:917546/1‑100 (MQ=255)
ggtggATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATc > 1:2972074/1‑100 (MQ=255)
ggtggATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATc > 2:3478053/1‑100 (MQ=255)
ggtggATGACGCCATCGTGGTGGTGAAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATc > 2:1411872/1‑100 (MQ=255)
gtggATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATcc < 2:2058312/100‑1 (MQ=255)
gATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAAc > 1:3759667/1‑100 (MQ=255)
aTGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCGTTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACg < 1:5109284/100‑1 (MQ=255)
aTGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACg < 1:2749390/100‑1 (MQ=255)
aTGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACg < 2:1536013/100‑1 (MQ=255)
aTGACGACATCGTGGTGGTGGAGAACGTCGGGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACg < 2:4116023/100‑1 (MQ=255)
tGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGATGCGACGCATAAATCGATGGGGCAGATCCAACGt > 2:3664759/1‑100 (MQ=255)
tGACGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGt > 1:3979868/1‑100 (MQ=255)
atctccATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTg < 2:3705695/96‑1 (MQ=255)
aCGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTgc < 1:945181/100‑1 (MQ=255)
aCGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTgc > 2:2131613/1‑100 (MQ=255)
cGCCATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTgcg > 1:498988/1‑100 (MQ=255)
ccATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCt < 1:2121005/100‑1 (MQ=255)
ccATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCt > 2:2146651/1‑100 (MQ=255)
ccATCGTGGTGGTGGAGAAAGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGCTCCAACGTGCGCt > 2:1041643/1‑100 (MQ=255)
cATCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTg < 1:3542000/100‑1 (MQ=255)
aTCGTGGTGGTGGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTgg < 2:4819803/100‑1 (MQ=255)
aTCGCGGTGGTGGCGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTgg > 2:4234084/1‑100 (MQ=255)
gtggtggtgGAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCg > 1:3882867/1‑100 (MQ=255)
tggtggtggAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCgg < 1:2899656/100‑1 (MQ=255)
tggtggtggAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCgg < 2:4947812/100‑1 (MQ=255)
tggtggtggAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCgg < 2:3118944/100‑1 (MQ=255)
ggtggtggAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGt < 1:2490306/100‑1 (MQ=255)
gtggtggAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTa > 2:2234056/1‑100 (MQ=255)
tggtggAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTAt < 2:2358228/100‑1 (MQ=255)
tggtggAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTAt < 2:1524040/100‑1 (MQ=255)
tggtggAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTAt > 1:3389728/1‑100 (MQ=255)
tggtggAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTAt < 1:1144148/100‑1 (MQ=255)
ggtggAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTAtt > 2:2677747/1‑100 (MQ=255)
tggAGAACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGc > 2:3888138/1‑100 (MQ=255)
gagaACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCg < 2:3014147/100‑1 (MQ=255)
agaACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCgt > 1:2278232/1‑100 (MQ=255)
gaACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCgtt > 1:105680/1‑100 (MQ=255)
gaACGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCgtt > 2:1052135/1‑100 (MQ=255)
aaCGTCGAGCGCGTCATTGCGGAAGAGAAGCTACCGCAGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCgttg < 2:4611219/100‑1 (MQ=255)
aCGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGGGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCgttgt < 2:299700/100‑1 (MQ=255)
cGTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCgttgtt > 1:3282736/1‑100 (MQ=255)
gTCGAGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTc < 1:473935/100‑1 (MQ=255)
aGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTc > 2:244122/1‑100 (MQ=255)
aGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTc < 2:1953301/100‑1 (MQ=255)
aGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTc > 1:572362/1‑100 (MQ=255)
aGCGCGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTc < 1:4698749/100‑1 (MQ=255)
aGCGCGTCAATGCGGAAAATAAGCTAACGCCGAAGGAAGCGACGCATAAATCGCTGGGGCAGATCCAACGTGCGCTGGTCGGTATTCGCGTTGTTCTTTc < 2:193077/100‑1 (MQ=255)
gcgcGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTcc > 1:1381165/1‑100 (MQ=255)
|
TCGGTTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGATAAGCTACCGCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCC > NC_000913/3661570‑3661763
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
