Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F422 I51 R1
|
223 |
69.9 |
1534784 |
95.1% |
1459579 |
214.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,939,836 |
A→C |
F259L (TTT→TTG) |
hsrA ← |
putative multidrug or homocysteine efflux system |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,939,836 | 0 | A | C | 98.4%
| 211.2
/ ‑3.2
| 63 | F259L (TTT→TTG) | hsrA | putative multidrug or homocysteine efflux system |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base C (34/28); total (34/29) |
| Fisher's exact test for biased strand distribution p-value = 4.60e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.55e-01 |
TCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTGGGTAACCATCGATTTTGCAATAATGGAACCTAACGCTGTCGGTGCCATCATACAGCCAGCAATAAACGCCTGATAACCAAATCCTACCTGTAACATCAATGGCATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGCGTCGTGCGGTGGTGAAATTGGGC > NC_000913/3939604‑3940055
|
tCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTGGGTAACCATCGATTTTGCAATAATGGAACCTAACGCTGTCGGTGCCATCATACAGCCAGCAATAAACGCCTGATAACCAAATCCTACCTGTAACATCAATGGCATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTtcaat < 2:345126/236‑1 (MQ=255)
aCCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTGGGTAACCATCGATTTTGCAATAATGGAACCTAACGCTGTCGGTGCCATCATACAGCCAGCAATAAACGCCTGATAACCAAATCCTACCTGTAACATCAATGGCATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTtcaataa > 1:526414/1‑236 (MQ=255)
tGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTGGGTAACCATCGATTTTGCAATAATGGAACCTAACGCTGTCGGTGCCATCATACAGCCAGCAATAAACGCCTGATAACCAAATCCTACCTGTATCATCAATGGCATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCt > 2:240077/1‑236 (MQ=255)
aTCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTGGGTAACCATCGATTTTGCAATAATGGAACCTAACGCTGTCGGTGCCATCATACAGCCAGCAATAAACGCCTGATAACCAAATCCTACCTGTAACATCAATGGCATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGGGAAAGTGCGGGGTTTCAATAAATCTaa > 1:646538/1‑236 (MQ=255)
cccaaatAAGGTATGGCAATAGCCCAGACGTAGTAAGACTTGGGTAACCATCGATTTTGCAATAATGGAACCTAACGCTGTCGGTGCCATCATACAGCCAGCAATAAACGCCTGATAACCAAATCCTACCTGTAACATCAATGGCATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATg < 2:419340/230‑1 (MQ=255)
aaCGTATGGCGATAGCCCAGACGACGTAAGACTTGGGTAACCATCGATTTTGCAATAATGGAACCTAACGCTGTCGGTGCCATCATACAGCCAGCAATAAACGCCTGATAACCAAATCCTACCTGTAACATCAATGGCATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTaa < 1:112981/236‑1 (MQ=255)
cGTATGGCGATAGCCCAGACGACGTAAGACTTGGGTAACCATCGATTTTGCAATATTGGAACCTAACGCTGTCGGTGCCATCATACAGCCAGCAATAAACGCCTGATAACCAAATCCTACCTGTAACATCAATGGCATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATAACGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATg > 2:716311/1‑236 (MQ=255)
tgggCGATAGCCCAGACGACGTAAGGCTTGGGTAACCATCGATTTTGCAATAATGGAACCTAACGCTGTCGGTGCCATCATACAGCCAGCAATAAACGCCTGATAACCAAATCCTACCTGTAACATCAATGGCATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGt < 2:17495/234‑1 (MQ=255)
taggCAATAGCCCAGAAGACGTAAGTCTTGGGTAACCATCGATTTTGCAATAATGGAACCTAACGCTGTCGGTGCCATCATACAGCCAGCAATAAACGCCTGATAACCAAATCCTACCTGTAACATCAATGGCATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGt < 2:646538/234‑1 (MQ=255)
aTGGCGATAGCCCGGACAACGTAGGACTTGGGTAACCATCGATTTTGCAATAATGGAACCTAACGCTGTCGGTGCCATCATACAGCCAGCAATAAACGCCTGATAACCAAATCCTACCTGTAACATCAATGGCATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGt < 2:722316/236‑1 (MQ=255)
cccAGACGACGTAAGACTTGGGTAACCATCGATTTTGCAATAATGGAACCTAACGCTGTCGGTGCCATCATACAGCCAGCAATAAACGCCTGATAACCAAATCCTACCTGTAACATCAATGGCATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGGTACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGgcgt > 2:588818/1‑233 (MQ=255)
gacgacGTAAGACTTGGGTAACCATCGATTTTGCAATAATGGAACCTAACGCTGTCGGTGCCATCATACAGCCAGCAATAAACGCCTGATAACCAAATCCTACCTGTAACATCAATGGCATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGgcgtgcg < 2:34143/232‑1 (MQ=255)
cgTAAGACTTGGGTAACCATCGATTTTGCAATAATGGAACCTAACGCTGTCGGTGCCATCATACAGCCAGCAATAAACGCCTGATAACCAAATCCTACCTGTAACATCAATGGCATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATg > 1:474453/1‑236 (MQ=255)
cgTAAGACTTGGGTAACCATCGATTTTGCAATAATGGAACCTAACGCTGTCGGTGCCATCATACAGCCAGCAATAAACGCCTGATAACCAAATCCTACCTGTAACATCAATGGCATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGGCCGGGTTTTCAATAAATCTAATGAAATTAATTGGTTTGGCGTGCGCCGTGCATg > 1:712633/1‑236 (MQ=255)
gggTAACCATCGATTTTGCAATAATGGAACCTAACGCTGTCGGTGCCATCATACAGCCAGCAATAAACGCCTGATAACCAAATCCTACCTGTAACATCAATGGCATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATg < 2:176847/226‑1 (MQ=255)
gggTAACCATCGATTTTGCAATAATGGAACCTAACGCTGTCGGTGCCATCATACAGCCAGCAATAAACGCCTGATAACCAAATCCTACCTGTAACATCAATGGCATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATg > 1:176847/1‑226 (MQ=255)
gggTAACCATCGATTTTGCAATAATGGAACCTAACGCTGTCGGTGCCATCATACAGCCAGCAATAAACGCCTGATAACCAAATCCTACCTGTAACATCAATGGCATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATag > 1:100249/1‑236 (MQ=255)
tAACCATCGATTTTGCAATAATGGAACCTAACGCTGTCGGTGCCATCATACAGCCAGCAATAAACGCCTGATAACCAAATCCTACCTGTAACATCAATGGCATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAgaga < 2:526414/236‑1 (MQ=255)
tGCAATAATGGAACCTAACGCTGTCGGTGCCATCATACAGCCAGCAATAAACGCCTGATAACCAAATCCTACCTGTAACATCAATGGCATAAGGAACGGCACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGACACCGATCGAGGAAGTCCGGGTTTTCAATAAATCTAATGAAATTAAAGGGATTGACGGTCGTCGTGCATTGCAAATATCTAGAATCatgaaacc > 2:355669/1‑227 (MQ=255)
atGGAACCTAACGCTGTCGGTGCCATCATACAGCCAGCAATAAACGCCTGATAACCAAATCCTACCTGTAACATCAATGGCATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGt < 2:484952/236‑1 (MQ=255)
tCGGTGCCATCATACAGCCAGCAATAAACGCCTGATAACCAAATCCTACCTGTAACATCAATGGCATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAg > 2:522296/1‑236 (MQ=255)
atcatACAGCCAGCAATAAACGCCTGATAACCAAATCCTACCTGTAACATCAATGGCATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATg < 1:247135/148‑1 (MQ=255)
atcatACAGCCAGCAATAAACGCCTGATAACCAAATCCTACCTGTAACATCAATGGCATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATg > 2:247135/1‑148 (MQ=255)
agcAATAAACGCCTGATAACCAAATCCTACCTGTAACATCAATGGCATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAgaga > 1:277966/1‑181 (MQ=255)
agcAATAAACGCCTGATAACCAAATCCTACCTGTAACATCAATGGCATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAgaga < 2:277966/181‑1 (MQ=255)
agcAATAAACGCCTGATAACCAAATCCTACCTGTAACATCAATGGCATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACaa > 1:496770/1‑236 (MQ=255)
agcAATAAACGCCTGATAACCAAATCCTACCTGTAACATCAATGGCATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACaa > 1:709284/1‑236 (MQ=255)
agcAATAAACGCCTGATAACCAAATCCTACCTGTAACATCAATGGCATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAACGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGCCaa > 1:75874/1‑236 (MQ=255)
aCGCCTGATAACCAAATCCTACCTGTAACATCAATGGCATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGgcgtgcgt < 2:709144/152‑1 (MQ=255)
aCGCCTGATAACCAAATCCTACCTGTAACATCAATGGCATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGgcgtgcgt > 1:709144/1‑152 (MQ=255)
cTGATAACCAAATCCTACCTGTAACATCAATGGCATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGGCACAAACTTTTcccct > 2:304573/1‑234 (MQ=255)
cTGATAACCAAATCCTACCTGTAACATCAATGGCATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCg > 1:443908/1‑235 (MQ=255)
taaTAACCAAATCCTACCTGTAACATCAATGGCATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGaa < 2:296045/234‑1 (MQ=255)
aTAACCAAATCCTACCTGTAACATCAATGGCATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGCCAATTACCTTAAAGGCAATACAGCTGGCGACAAACTTTTCCCCgcaac > 1:639096/1‑232 (MQ=255)
tAACCAAATCCTACCTGTAACATCAATGGCATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAg < 2:100249/236‑1 (MQ=255)
tAACCAAATCCATCCTTGAAGATCAATGGCATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAg < 2:474453/236‑1 (MQ=255)
cTGTAACATCAATGGCATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGt > 2:571071/1‑119 (MQ=255)
cTGTAACATCAATGGCATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGt < 1:571071/119‑1 (MQ=255)
aaCATCAATGGCATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTgagaa < 2:496770/236‑1 (MQ=255)
aTGGCATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTAGCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGCGAAc > 1:359865/1‑235 (MQ=255)
cATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGACCAAGGc > 1:227977/1‑236 (MQ=255)
tAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCt > 1:406066/1‑235 (MQ=255)
aaGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTg < 1:647440/235‑1 (MQ=255)
aGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAg > 2:294385/1‑236 (MQ=255)
ggTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCaa > 2:249700/1‑235 (MQ=255)
ggTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCa < 2:406066/234‑1 (MQ=255)
gTACACAGCCGGTCCACAGACGGGTTGCAATATTGCATACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCaa < 2:722524/234‑1 (MQ=255)
caGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTATCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCa < 2:709284/235‑1 (MQ=255)
gTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTaa < 2:201863/77‑1 (MQ=255)
gTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTaa > 1:201863/1‑77 (MQ=255)
gTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTgagaa > 1:720522/1‑203 (MQ=255)
gTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTgagaa < 2:720522/203‑1 (MQ=255)
gTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGcc > 1:109758/1‑236 (MQ=255)
ccAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAACGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGt < 2:75874/235‑1 (MQ=255)
cAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTg > 2:169579/1‑235 (MQ=255)
ggTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATc > 1:49063/1‑234 (MQ=255)
tGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCaaa > 2:44457/1‑202 (MQ=255)
tGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCaaa < 1:44457/202‑1 (MQ=255)
tGCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCACTGATATCGAAACTGcg > 2:217143/1‑232 (MQ=255)
gCCTACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGCGTCGTg < 2:49063/236‑1 (MQ=255)
tACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGCGTCGTGCgg < 1:522296/236‑1 (MQ=255)
tACGATACCGATCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGCGTCGTGCgg < 1:240077/236‑1 (MQ=255)
aTCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGTGAAGAGAACAAGGCTGAGGCCAAACAGCCAAAAGCCAGTGATATCGAATCTGCGTCGCGCGGTGGCGAAAtt > 1:746465/1‑236 (MQ=255)
aTCGAGAAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGCGTCGTGCGGTGGTGAAAt > 1:425448/1‑235 (MQ=255)
agaAAGTGCGGGTTTTCAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGCGTCGTGCGGTGGTGAAATTGGGc < 1:716311/236‑1 (MQ=255)
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TCACCGTGATCCCCACTAACGTATGGCGATAGCCCAGACGACGTAAGACTTGGGTAACCATCGATTTTGCAATAATGGAACCTAACGCTGTCGGTGCCATCATACAGCCAGCAATAAACGCCTGATAACCAAATCCTACCTGTAACATCAATGGCATAAGGAACGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGCGTCGTGCGGTGGTGAAATTGGGC > NC_000913/3939604‑3940055
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
