Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F422 I53 R1
|
229 |
158.0 |
8090706 |
91.1% |
7370633 |
100.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,082,025 |
A→C |
Y38S (TAC→TCC) |
loiP → |
Phe‑Phe periplasmic metalloprotease, OM lipoprotein; low salt‑inducible; Era‑binding heat shock protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,082,025 | 0 | A | C | 98.6%
| 493.6
/ ‑5.6
| 146 | Y38S (TAC→TCC) | loiP | Phe‑Phe periplasmic metalloprotease, OM lipoprotein; low salt‑inducible; Era‑binding heat shock protein |
| Reads supporting (aligned to +/- strand): ref base A (1/0); major base C (74/69); minor base T (1/1); total (76/70) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 146 total aligned reads displayed.
TATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGAATACGC > NC_000913/3081929‑3082121
|
tATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAg > 2:2988739/1‑100 (MQ=255)
ttGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGtt < 1:726274/100‑1 (MQ=255)
ggTAGCAATGAGCGTGGCAAGGGTACTAACTCGTTGCCAGACTATGGAATCCAAACGACTGCTCTCATCAGGCGCGGAAGCTTTTCAGGCTTTCAGttcg > 2:3985456/1‑98 (MQ=255)
ggTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTg < 1:1170951/100‑1 (MQ=255)
ggTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTg > 1:2034140/1‑100 (MQ=255)
gTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGa < 1:1818581/100‑1 (MQ=255)
gTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGa < 2:3474098/100‑1 (MQ=255)
gTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGa > 1:297400/1‑100 (MQ=255)
tAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGan < 1:3256222/100‑2 (MQ=255)
tAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAg > 1:1318658/1‑100 (MQ=255)
tAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAg < 1:2132315/100‑1 (MQ=255)
aGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGt < 2:507466/100‑1 (MQ=255)
gCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTg < 2:644001/100‑1 (MQ=255)
gCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTg > 1:4070820/1‑100 (MQ=255)
gCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTg < 2:2651852/100‑1 (MQ=255)
cAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGa > 1:585884/1‑100 (MQ=255)
cAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGa > 1:4086330/1‑100 (MQ=255)
cAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGa < 1:947778/100‑1 (MQ=255)
aaTGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGAt < 1:395730/100‑1 (MQ=255)
aTGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATg > 1:109567/1‑100 (MQ=255)
tGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATgc < 2:13391/100‑1 (MQ=255)
gAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATgcg < 2:2223246/100‑1 (MQ=255)
aGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATgcgc < 1:1566527/100‑1 (MQ=255)
gCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGCGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCa > 2:3858248/1‑100 (MQ=255)
gCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCa < 2:328465/100‑1 (MQ=255)
ggCAACGGTACTGCCTGGTTGCCAGCATATGGCCTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCGTCCAGTTTGAGTGATGCGCAGGTg > 2:3472282/1‑100 (MQ=255)
ggCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTg < 1:2545427/100‑1 (MQ=255)
aCGGTACTGACTGGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGaaaa > 2:3407309/1‑100 (MQ=255)
cGGTACTGACTGGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCCGTTTGAGTGATGCGCAGGTGAAAAc > 2:333788/1‑100 (MQ=255)
cGGTACTGACTGGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAAc < 1:1341465/100‑1 (MQ=255)
cGGTACTGACTGGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAAc < 1:3993963/100‑1 (MQ=255)
ggTACTGACTGGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAAcc < 2:3134110/100‑1 (MQ=255)
ctgactgGTTGCCAGAATATGGACTCCAACGGTCTGCTCTCATCAGGAGCGGGAGCTTTTCAGGCTGCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGa > 2:806485/1‑100 (MQ=255)
ctgactgGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGa > 1:2438238/1‑100 (MQ=255)
ctgactgGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGa > 2:701913/1‑100 (MQ=255)
ctgactgGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGa > 1:354205/1‑100 (MQ=255)
ttactgGTTGCCAGAATATGGACTCCAACGGACTGCTCTGATCAGGAGCTGAAGGTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAg < 2:114287/98‑1 (MQ=255)
tgactgGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAg > 2:1261019/1‑100 (MQ=255)
tgactgGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTGTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAg < 2:483249/100‑1 (MQ=255)
gactgGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAga > 2:2717342/1‑99 (MQ=255)
actgGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCg < 1:3501290/100‑1 (MQ=255)
ctgGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGa > 1:2776988/1‑100 (MQ=255)
ctgGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGa > 1:3685989/1‑100 (MQ=255)
ggTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATc > 1:806130/1‑100 (MQ=255)
ggTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCATGAGCGATc > 2:3797071/1‑100 (MQ=255)
gTTGCCAGAATATGGACTCCGACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCa < 2:3568434/100‑1 (MQ=255)
ttGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAg < 2:3616882/100‑1 (MQ=255)
ttGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAg < 1:71988/100‑1 (MQ=255)
tGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAgg > 2:529015/1‑100 (MQ=255)
tGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTCTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAgg < 1:3677857/100‑1 (MQ=255)
gCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGc < 2:2305227/100‑1 (MQ=255)
ccAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCa > 2:2889092/1‑100 (MQ=255)
ccAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCa > 1:2709490/1‑100 (MQ=255)
aGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATg < 2:1696064/100‑1 (MQ=255)
aGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATg < 2:2293307/100‑1 (MQ=255)
aGAATATGGACGCCAACGGGCTGCTGTAATCAGGAGCGGAAGTTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATg < 2:1598506/100‑1 (MQ=255)
gAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGt > 1:2293063/1‑100 (MQ=255)
atatGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCa > 1:99842/1‑100 (MQ=255)
tatGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAg > 2:3117564/1‑100 (MQ=255)
tatGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAg < 1:3977244/100‑1 (MQ=255)
atGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAgg < 2:427685/100‑1 (MQ=255)
tGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGga < 2:2341165/100‑1 (MQ=255)
ggACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGgag > 2:467033/1‑100 (MQ=255)
gACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGgaga < 1:3368297/100‑1 (MQ=255)
gACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGgaga > 2:2497980/1‑100 (MQ=255)
aCTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGAt > 2:1125984/1‑100 (MQ=255)
cTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCCGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATg > 2:753173/1‑100 (MQ=255)
cTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATg > 1:3113268/1‑100 (MQ=255)
cTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATg > 2:481273/1‑100 (MQ=255)
tCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATgg < 2:2578616/100‑1 (MQ=255)
ccAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAGCCCTGAGCGATCAGGCATGTCAGGAGATGGa < 1:3452882/100‑1 (MQ=255)
aaCGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACa > 2:3653887/1‑100 (MQ=255)
cTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAgg < 1:2004694/100‑1 (MQ=255)
cTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAgg > 1:302963/1‑100 (MQ=255)
gCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGcg < 1:780446/100‑1 (MQ=255)
gCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGcg > 2:221185/1‑100 (MQ=255)
ctctCATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGcga > 1:1481300/1‑100 (MQ=255)
ctcATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCATGCATGTCAGGAGATGGACAGCAAGGcgacg < 2:35862/100‑1 (MQ=255)
ctcATCAGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGcgacg > 2:1736428/1‑100 (MQ=255)
catcaGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGAt > 1:603969/1‑100 (MQ=255)
catcaGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGAt > 1:3052514/1‑100 (MQ=255)
catcaGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGAt > 2:1722605/1‑100 (MQ=255)
tcaGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTg < 1:2057738/100‑1 (MQ=255)
caGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTgc > 1:3331421/1‑100 (MQ=255)
aGGAGCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTgcg < 1:1272354/100‑1 (MQ=255)
gCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCgcccg > 2:3089210/1‑98 (MQ=255)
gCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCgccag > 1:363610/1‑100 (MQ=255)
gCGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCgccag < 1:1722763/100‑1 (MQ=255)
cGGAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTAAGGAGATGGACAGCAAGGCGACGATTGCgccagc < 2:3031038/100‑1 (MQ=255)
ggAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCgccagcc < 2:1944157/100‑1 (MQ=255)
ggAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCgccagcc < 1:4015031/100‑1 (MQ=255)
gAAGCTTTTCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCgccagcca > 2:2129716/1‑100 (MQ=255)
ttttCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCGGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGc > 1:4052615/1‑100 (MQ=255)
ttttCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGc > 1:310043/1‑100 (MQ=255)
tCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGGGCGATCAGGGATGTCAGGAGATGGACAGCAAGGCGACGATGGCGCCAGCCAATAGCGaa < 2:1703606/100‑1 (MQ=255)
tCAGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGaa < 1:2933030/100‑1 (MQ=255)
aGGCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGAATa > 2:1698248/1‑100 (MQ=255)
ggCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGAATAc > 2:1779929/1‑100 (MQ=255)
gCTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGAATACg > 2:1894151/1‑100 (MQ=255)
cTTCCAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGAATACGc > 2:3214751/1‑100 (MQ=255)
|
TATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGAATACGC > NC_000913/3081929‑3082121
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
