Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F236 I1 R1
|
155 |
93.2 |
2393300 |
97.8% |
2340647 |
180.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,334,302 |
A→C |
D198A (GAT→GCT) |
ispB → |
octaprenyl diphosphate synthase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,334,302 | 0 | A | C | 98.8%
| 305.3
/ NA
| 86 | D198A (GAT→GCT) | ispB | octaprenyl diphosphate synthase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base C (39/46); minor base G (0/1); total (39/47) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.90e-01 |
TCCAGATGATGACCAGCCTCGGTTCGCTCAAAGTGCTGGAAGTCATGTCAGAAGCCGTAAACGTCATCGCAGAAGGTGAAGTTCTGCAACTGATGAACGTTAACGATCCGGACATCACTGAAGAAAACTACATGCGCGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGATTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAGGTAAACCGACGCTGCCGCTGCTGCATGCGATGCATCATGGCACACCAGAACAGGCACAGATGATCCGTACCGCCATCGAACAGGGTAACGGTCGCCATCTTCTGGAACCGGT > NC_000913/3334068‑3334521
|
tCCAGATGATGACCAGCCTCGGTTCGCTCAAAGTGCTGGAAGTCATGTCAGAAGCCGTAAACGTCATCGCAGAAGGTGAAGTTCTGCAACTGATGAACGTTAACGATCCGGACATCACTGAAGAAAACTACATGCGCGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTAt < 1:239734/239‑1 (MQ=255)
tgatgaCCAGCCTCGGTTCGCTCAAAGTGCTGGAAGTCATGTCAGAAGCCGTAAACGTCATCGCAGAAGGTGAAGTTCTGCAACTGATGAACGTTAACGATCCGGACATCACTGAAGAAAACTACATGCGCGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGgcgc < 1:120153/239‑1 (MQ=255)
gaCCAGCCTCGGTTCGCTCAAAGTGCTGGAAGTCATGTCAGAAGCCGTAAACGTCATCGCAGAAGGTGAAGTTCTGCAACTGATGAACGTTAACGATCCGGACATCACTGAAGAAAACTACATGCGCGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGgc > 2:1127152/1‑233 (MQ=255)
gCCTCGGTTCGCTCAAAGTGCTGGAAGTCATGTCAGAAGCCGTAAACGTCATCGCAGAAGGTGAAGTTCTGCAACTGATGAACGTTAACGATCCGGACATCACTGAAGAAAACTACATGCGCGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTCTGGGCGCTATCTCGGc > 1:1088498/1‑239 (MQ=255)
cTCGGTTCGCTCAAAGTGCTGGAAGTCATGTCAGAAGCCGTAAACGTCATCGCAGAAGGTGAAGTTCTGCAACTGATGAACGTTAACGATCCGGACATCACTGAAGAAAACTACATGCGCGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCa < 2:528712/238‑1 (MQ=255)
cTCGGTTCGCTCAAAGTGCTGGAAGTCAGGTCAGAAGCCGTAACCGTCATCGCAGAAGGTGAAGTTCTGCAACTGATGAACGTTAACGATCCGGACATCACTGAAGAAAACTCCATGCGCGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGAAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGcg < 2:932683/238‑2 (MQ=255)
gTTCGCTCAAAGTGCTGGAAGTCATGTCAGAAGCCGTAAACGTCATCGCAGAAGGTGAAGTTCTGCAACTGATGAACGTTAACGATCCGGACATCACTGAAGAAAACTACATGCGCGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGGGGAGGGGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGcg > 2:886018/1‑238 (MQ=255)
aGTGCTGGAAGTCATGTCAGAAGCCGTAAACGTCATCGCAGAAGGTGAAGTTCTGCAACTGATGAACGTTAACGATCCGGACATCACTGAAGAAAACTACATGCGCGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGa > 1:968501/1‑239 (MQ=255)
aGTCATGTCAGAAGCCGTAAACGTCATCGCAGAAGGTGAAGTTCTGCAACTGATGAACGTTAACGATCCGGACATCACTGAAGAAAACTACATGCGCGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGAtt < 2:380393/239‑1 (MQ=255)
aGTCATGTCAGAAGCCGTAAACGTCATCGCAGAAGGTGAAGTTCTGCAACTGATGAACGTTAACGATCCGGACATCACTGAAGAAAACTACATGCGCGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGAtt < 2:230247/239‑1 (MQ=255)
cATGTCAGAAGCCGTAAACGTCATCGCAGAAGGTGAAGTTCTGCAACTGATGAACGTTAACGATCCGGACATCACTGAAGAAAACTACATGCGCGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGAttt < 2:742377/237‑1 (MQ=255)
cATGTCAGAAGCCGTAAACGTCATCGCAGAAGGTGAAGTTCTGCAACTGATGAACGTTAACGATCCGGACATCACTGAAGAAAACTACATGCGCGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGAttt > 1:742377/1‑237 (MQ=255)
cATGTCAGAAGCCGTAAACGTCATCGCAGAAGGTGAAGTTCTGCAACTGATGAACGTTAACGATCCGGACATCACTGAAGAAAACTACATGCGCGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGAttt > 1:532402/1‑237 (MQ=255)
cATGTCAGAAGCCGTAAACGTCATCGCAGAAGGTGAAGTTCTGCAACTGATGAACGTTAACGATCCGGACATCACTGAAGAAAACTACATGCGCGTTATCTATAGCAAAACCGCGCGCCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGTCACGGCTTTCCAGTTGATCGATGAttt > 2:526287/1‑237 (MQ=255)
cATGTCAGAAGCCGTAAACGTCATCGCAGAAGGTGAAGTTCTGCAACTGATGAACGTTAACGATCCGGACATCACTGAAGAAAACTACATGCGCGTTATCTATAGCAAAACAGCGCGTCTGTTTGAGGCTGCCGCGCAGGGTTCCGGGATCCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTCTGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGAttt > 1:1154916/1‑237 (MQ=255)
tGTCAGAGGCCGTAAACGGCATCGCAGAAGGTGAAGTTCTGCAACTGATGAACGTTAACGATCCGGACATCACTGAAGAAAACTACATGCGCGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTc < 2:1087318/239‑1 (MQ=255)
tGTCAGAAGCCGTAAACGTCATCGCAGAAGGTGAAGTTCTGCAACTGATGAACGTTAACGATCCGGACATCACTGAAGAAAACTACATGCGCGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTc < 2:444244/239‑1 (MQ=255)
tAAACGTCATCGCAGAAGGTGAAGTTCTGCAACTGATGAACGTTAACGATCCGGACATCACTGAAGAAAACTACATGCGCGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGcc > 2:830977/1‑239 (MQ=255)
aaaCGTCATCGCAGAAGGTGAAGTTCTGCAACTGAGGAACGTTAACGATCCGGACATCACTGAAGAAAACTACATGCGCGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCg < 1:93395/239‑1 (MQ=255)
aTCGCAGAAGGTGAAGTTCTGCAACTGATGAACGTTAACGATCCGGACATCACTGAAGAAAACTACATGCGCGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGa > 2:784695/1‑239 (MQ=255)
tCGCAGAAGGTGAAGTTCTGCAACTGATGAACGTTAACGATCCGGACATCACTGAAGAAAACTACATGCGCGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGaa < 2:968501/239‑1 (MQ=255)
gCAGAAGGTGAAGTTCTGCAACTGATGAACGTTAACGATCCGGACATCACTGAAGAAAACTACATGCGCGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCg < 1:173661/235‑1 (MQ=255)
aGGTGAAGTTCTGCAACTGATGAACGTTAACGATCCGGACATCACTGAAGAAAACTACATGCGCGTTATCGATAGCAAACCCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCGGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGtt < 1:274010/237‑1 (MQ=255)
cAACTGATGAACGTTAACGATCCGGACATCACTGAAGAAAACTACATGCGCGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTa < 2:1084304/195‑1 (MQ=255)
cAACTGATGAACGTTAACGATCCGGACATCACTGAAGAAAACTACATGCGCGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTa > 1:1084304/1‑195 (MQ=255)
gatgaACGTTAACGATCCGGACATCACTGAAGAAAAGTACATGCGCGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCGGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGGGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGGCGATTTACTCGATTACAATGCCGATTGCGAACAGTTAGGTAAAAATGTCCGcgtcg > 2:133699/1‑239 (MQ=255)
aCGTTAACGATCCGGACATCACTGAAGAAAACTACATGCGCGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGcgacga > 1:200606/1‑235 (MQ=255)
gTTAACGATCCGGGCATAACTGAAGTAAACTACATGCGTGTTATCTATAGCAACACCGGGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGaa < 2:346979/239‑1 (MQ=255)
gATCCGGACATCACTGAAGAAAACTACATGCGCGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAgg < 2:1059545/239‑1 (MQ=255)
gATCCGGACATCACTGAAGAAAACTACATGCGCGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAgg < 2:461532/239‑1 (MQ=255)
aTCCGGACATCACTGAAGAAAACTACATGCGCGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGt < 1:1041123/217‑1 (MQ=255)
aTCCGGACATCACTGAAGAAAACTACATGCGCGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGt > 2:1041123/1‑217 (MQ=255)
gACATCACTGAAGAAAACTACATGCGCGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGa < 1:136628/194‑1 (MQ=255)
gACATCACTGAAGAAAACTACATGCGCGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGa > 2:136628/1‑194 (MQ=255)
cATCACTGAAGAAAACTACATGCGCGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAGGTAAACCg > 1:473476/1‑238 (MQ=255)
aTCACTGAAGAAAACTACATGCGCGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAGGTAAACCGa > 1:1092426/1‑238 (MQ=255)
tCACTGAAGAAAACTACATGCGCGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGtt > 1:773717/1‑196 (MQ=255)
tCACTGAAGAAAACTACATGCGCGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGtt < 2:773717/196‑1 (MQ=255)
tCACTGAAGAAAACTACATGCGCGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGCAGGTAAACCGAc > 2:309446/1‑238 (MQ=255)
aCTGAAGAAAACTACATGCGCGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAGGTAAACCGAc > 1:75533/1‑236 (MQ=255)
aCTGAAGAAAACTACATGCGCGTTATCTAGAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGGGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAGGTAAACCGAc < 2:104433/236‑1 (MQ=255)
agaaACCTACATGCGCGTTGTCTATAGCAAAACCGGGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAGGTAAACCGAcgctgccg < 2:200606/238‑1 (MQ=255)
aaCTACATGCGCGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAGGTAAACCGAcgctgccgct > 1:1194345/1‑236 (MQ=255)
cTACATGCGCGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAGGTAAACCGACGCTGCCGCtgctgc < 1:1127152/239‑1 (MQ=255)
tGCGCGTTATCTATAGCAAAACCGGGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAGGTAAACCGACGCTGCCGCTGCTGCATGCg < 2:1088498/239‑1 (MQ=255)
gcgcGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGgc < 2:492403/110‑1 (MQ=255)
gcgcGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGgc > 1:492403/1‑110 (MQ=255)
gcgTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGaa > 1:23085/1‑170 (MQ=255)
gcgTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGaa < 2:23085/170‑1 (MQ=255)
cgTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAGGTAAACCGAcgc > 1:222719/1‑218 (MQ=255)
cgTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAGGTAAACCGAcgc < 2:222719/218‑1 (MQ=255)
tataTCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAGGTAAACCGACGCTGCCGCTGCTGCATGCGATGCATCATgg < 2:1154916/239‑1 (MQ=255)
tataGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAGGTAAACCGACGCTGCCGCTGCTGCATGCGATGCATCATgg < 2:473476/239‑1 (MQ=255)
taGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAGGTAAACCGACGCTGCCGCTGCTGCATGCGATGCATCATGGc > 2:589580/1‑238 (MQ=255)
cAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAGGTAAACCGACGCTGCCGCTGCTGCATGCGATGcat < 1:359115/229‑1 (MQ=255)
cAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAGGTAAACCGACGCTGCCGCTGCTGCATGCGATGcat > 2:359115/1‑229 (MQ=255)
aaagCCGCGCGTCTGTTTGGGGCTGCAGCGCAGTGTGCGGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTCGCTCGGCACTGGTTTCCAGTTGATCTACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAGGTAAACCGACGCTGCCGCTGCTGCATGCGATGCGTCATGGCACAcc < 2:743924/239‑1 (MQ=255)
aaaaCCGGTGGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAGGTAAACCGACGCTGCCGCTGCTGCATGCGATGCATCATGGca < 2:307411/235‑1 (MQ=255)
aaaaCCGCGCTTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCTCCGATCTGAACGAAGGTAAACCGACGCTGCCGCTGCTGCATGCGATGCATCATGGca < 2:952272/235‑1 (MQ=255)
aaCCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAGGTAAACCGACGCTGCCGCTGCTGCATGCGATGCATCATGGCACACCAg > 2:485588/1‑239 (MQ=255)
aaCCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAGGTAAACCGACGCTGCCGCTGCTGCATGCGATGCATCATGGCACACCAg > 2:590512/1‑239 (MQ=255)
gcgcgTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAGGTAAACCGACGCTGCCGCTGCTGCATGCGATGCATCATGGCACACCAGAACa > 2:117380/1‑239 (MQ=255)
cgcgTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATc > 1:1033667/1‑116 (MQ=255)
cgcgTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATc < 2:1033667/116‑1 (MQ=255)
cgcgTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAGGTAAACCGACGCTGCCGCTGCTGCATGCGATGCATCATGGCACACCAGAACAg > 2:162435/1‑239 (MQ=255)
gcgTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAGGTAAACCGACGCTGCCGCTGCTGCATGCGATGCATCATGGCACACCAGaa < 2:828638/235‑1 (MQ=255)
cgTTTGTTTGAGGCTGCCGCTCAGTGTTCCGGGATTCTTGCTGGCTGTACGCCGGAGGGGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGCCGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAGGTAAACCGCCGCTGCCGCTGCTGCATGCGATGCATCATGGCACACCAGAACAgg < 2:705937/238‑1 (MQ=255)
gCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAGGTAAACCGACGCTGCCGCTGCTGCATGCGATGCATCATGGCACACCAGAACAGGCACAGATGATCCGTAc < 1:162435/239‑1 (MQ=255)
ccGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAgg > 2:1134168/1‑169 (MQ=255)
ccGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAgg < 1:1134168/169‑1 (MQ=255)
ccGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAGGTAAACCGACGCTGCCGCTGCTGCATGCGATg < 2:59218/200‑1 (MQ=255)
ccGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAGGTAAACCGACGCTGCCGCTGCTGCATGCGATg > 1:59218/1‑200 (MQ=255)
ccGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAGGTAAACCGACGCTGCCGCTGCTGCATGCGATGCATCATGGCACACCAGAACAGGCACAGATGATCCGTAc < 1:589580/238‑1 (MQ=255)
gtTCCGGGATTCTGGGTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAGGTAAACCGACGCTGCCGCTGCTGCATGCGATGCATCATGGCACACCAGAACAGGCACAGATGATCCGTACCGCCATCGaa < 1:134611/239‑1 (MQ=255)
ttCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAGGTAAACCGACGCTGCCGCTGCTGCATGCGATGCATCATGGCACACCAGAACAGGCACAGATGATCCGTACCGCCATCGAAc > 2:788303/1‑239 (MQ=255)
ttCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAGGTAAACCGACGCTGCCGCTGCTGCa > 2:334593/1‑175 (MQ=255)
ttCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAGGTAAACCGACGCTGCCGCTGCTGCa < 1:334593/175‑1 (MQ=255)
ctggctggCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAGGTAAACCGACGCTGCCGCTGCTGCATGCGATGCATCATGGCACACCAGAACAGGCACAGATGATCCGTACCGCCATCGAACAGGGTAACg > 2:131064/1‑238 (MQ=255)
ctggctgTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAGGTAAACCGACGCTGCCGCTGCTGCATGCGATGCATCATGGCACACCAGAACAGGCACAGATGATCCGTACCGCCATCGAACAGGGTAACGGTCg < 1:590512/238‑1 (MQ=255)
ggctgTACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAGGTAAACCGACGCTGCCGCTGCTGCATGCGATGCATCATGGCACACCAGAACAGGCACAGATGATCCGTACCGCCATCGAACAGGGTAACGGTCGCCa < 2:895140/239‑1 (MQ=255)
tACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGaa < 1:188987/132‑1 (MQ=255)
tACGCCGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGaa > 2:188987/1‑132 (MQ=255)
cGGAGGAGGAGAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAGGTAAACCGACGCTGCCGCTGCTGCATGCGATGCATCATGGCACACCAGAACAGGCACAGATGATCCGTACCGCCATCGAACAGGGTAACGGTCGCCATCTTCTGGaa < 1:117380/239‑1 (MQ=255)
gaggaggagAAAGGCCTGCAGGCTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAGGTAAACCGACGCTGCCGCTGCTGCATGCGATGCATCATGGCACACCAGAACAGGCACAGATGATCCGTACCGCCATCGAACAGGGTAACGGTCGCCATCTTCTGGAAcc > 1:628019/1‑239 (MQ=255)
gaggagAAAGGCCTGCAGGCTTTTGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAGGTAAACCGACGCTGCCGCTGCTGCATGCGATGCATCATGGCACACCAGAACAGGCACAGATGATCCGTACCGCCATCGAACAGGGTAACGGTCGCCATCTTCTGGAACCGGt > 2:721962/1‑239 (MQ=255)
aggagAAAGGCCTGCAGGGTTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAGGTAAACCGACGCTGCCGCTGCTGCATGCGATGCATCATGGCACACCAGAACAGGCACAGATGATCCGTACCGCCATCGAACAGGGTAACGGTCGCCATCTTCTGGAACCGGt < 1:94233/238‑1 (MQ=255)
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TCCAGATGATGACCAGCCTCGGTTCGCTCAAAGTGCTGGAAGTCATGTCAGAAGCCGTAAACGTCATCGCAGAAGGTGAAGTTCTGCAACTGATGAACGTTAACGATCCGGACATCACTGAAGAAAACTACATGCGCGTTATCTATAGCAAAACCGCGCGTCTGTTTGAGGCTGCCGCGCAGTGTTCCGGGATTCTGGCTGGCTGTACGCCGGAGGAGGAGAAAGGCCTGCAGGATTATGGGCGCTATCTCGGCACTGCTTTCCAGTTGATCGACGATTTACTCGATTACAATGCCGATGGCGAACAGTTAGGTAAAAATGTCGGCGACGATCTGAACGAAGGTAAACCGACGCTGCCGCTGCTGCATGCGATGCATCATGGCACACCAGAACAGGCACAGATGATCCGTACCGCCATCGAACAGGGTAACGGTCGCCATCTTCTGGAACCGGT > NC_000913/3334068‑3334521
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
