Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A23 F20 I1 R1
|
23 |
104.0 |
2230032 |
95.9% |
2138600 |
148.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
USA300TCH1516_ALE |
2,279,705 |
G→A |
A943V (GCA→GTA) |
ebh_3 ← |
Extracellular matrix‑binding protein ebh |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | USA300TCH1516_ALE | 2,279,705 | 0 | G | A | 98.7%
| 460.1
/ NA
| 153 | A943V (GCA→GTA) | ebh_3 | Extracellular matrix‑binding protein ebh |
| Reads supporting (aligned to +/- strand): ref base G (0/1); major base A (66/82); minor base C (2/0); total (68/85) |
| Fisher's exact test for biased strand distribution p-value = 2.04e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 153 total aligned reads displayed.
TTTATCAGTTGTGCCGTTATTAGTTGATTCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTGCTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGCATTAGCATTTGAATTTGCTGTTGCATCAT > USA300TCH1516_ALE/2279560‑2279849
|
tttATCAGTTTTGCCGTTATTAGTTGATTCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACtg < 2:1029576/149‑1 (MQ=255)
tCAGTTGTGCCGTTATTAGTTGATTCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACtgttgt < 2:535662/149‑1 (MQ=255)
tCAGTTGTGCCGTTATTAGTTGATTCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACtgttgt > 1:536697/1‑149 (MQ=255)
aGTTGTGCCGTTATTGGTTGATTCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGttt < 1:567225/149‑1 (MQ=255)
aGTTGTGCCGTTATTAGTTGATTCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCCTGCGGTTTATCATTTTCATCCTATGTTGCTGATGTTACtttttttt > 2:169870/1‑149 (MQ=255)
ttGTGCCGTTATTAGTTGATTCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGGTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCa > 1:162329/1‑149 (MQ=255)
tgCCGTTATTAGTTGATTCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTAATGTTGTTTCACC‑t > 2:156915/1‑149 (MQ=255)
tttattaGTTGATTCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTg < 1:238380/148‑1 (MQ=255)
ttattaGTTGATTCTTCTTCTGTCTTCTCAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGc < 2:229945/149‑1 (MQ=255)
ttattaGTTGATTCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCGTGCGGGTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGc > 2:648024/1‑149 (MQ=255)
ttattaGTTGATTCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGATTGTTGCTGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCTTCTTCAGTTGCTGTTGTTACTGTTGTTTCACC‑TCTTGc > 1:374259/1‑149 (MQ=255)
tattaGTTGATTCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGcc < 1:781757/149‑1 (MQ=255)
tattaGTTGATTCTACTTCTGGTTTACTAGTTACATCGCTCCCAGTTTGCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGcc < 1:859609/149‑1 (MQ=255)
taGTTGATTCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCa > 2:1108224/1‑149 (MQ=255)
taGGTGATTCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCCGTTTTTCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCa < 1:492441/149‑1 (MQ=255)
gTTGATTCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATc < 1:984138/149‑1 (MQ=255)
gTTGATTCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATc < 2:940338/149‑1 (MQ=255)
ttGATTCTACTTCTGGTTTACTAGTTACATCGTTATCCGTTGTCTGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCa < 1:922060/149‑1 (MQ=255)
ttGATTCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCa < 1:92215/149‑1 (MQ=255)
ttGATTCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCa < 2:58910/149‑1 (MQ=255)
ttGATTCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTATTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCAAC‑TGTTGCCGCATCa < 2:617176/149‑1 (MQ=255)
tGATTGTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCAc < 2:650715/149‑1 (MQ=255)
tGATTCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCAc > 2:1088134/1‑149 (MQ=255)
aTTCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCCCta > 2:680863/1‑149 (MQ=255)
aTTCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACta > 2:449965/1‑149 (MQ=255)
aTTCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTCGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATccata > 2:597397/1‑145 (MQ=255)
aTTCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTGGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACta < 1:324923/149‑1 (MQ=255)
tCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACtatt > 1:293055/1‑149 (MQ=255)
ttCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTg < 1:394077/149‑1 (MQ=255)
tCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTACTATTTgg > 1:970673/1‑149 (MQ=255)
tttACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCGTCACTATTATTTGGtgttg > 1:1095381/1‑149 (MQ=255)
tttACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGtgttg > 1:192745/1‑149 (MQ=255)
tACTAGTTCCATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTc < 1:998558/149‑1 (MQ=255)
cTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCgg < 1:470726/149‑1 (MQ=255)
tACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAg > 1:392892/1‑149 (MQ=255)
cATCGTTATCCATTTGCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCg < 2:306888/149‑1 (MQ=255)
ttCGTTATCTGTTGTCGGACTGTTTATTATTTCATCTCCACCCGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCAGCAGTGGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGt < 2:178516/148‑1 (MQ=255)
ctCGTTTTCCATTGTCGGACTGTTTGTTGATGCCTCTACACTAGGATTGTTATTAGCTTGCGGTTTCTCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGt < 2:314597/148‑1 (MQ=255)
aTCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGTACCGt > 2:586805/1‑149 (MQ=255)
aTCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGAGTTGTCGGAGGAGCGt > 2:24946/1‑149 (MQ=255)
tCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTc > 2:866875/1‑149 (MQ=255)
tCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTc < 1:299259/149‑1 (MQ=255)
cGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCgccg > 2:912758/1‑146 (MQ=255)
gTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGCATTGTTATTGGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGCTGTTCCTGTTGTTTCCCC‑TGCTGCCGCATCACTATTATTTGGTGTTGTCGGAGAGGCGTCtc > 2:31624/1‑148 (MQ=255)
ttATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGc < 1:724963/149‑1 (MQ=255)
ccATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTg > 1:635347/1‑149 (MQ=255)
tttttCGGACTGTTTGTTGATTCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGcc < 2:523488/145‑1 (MQ=255)
cttGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGcc < 1:1012653/148‑1 (MQ=255)
aTTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGGTGTTACTGTTGCTTTACCATGGT‑CCTGGTGACTATAATTTGGTTTTATCGGAGAGGCGTCTGCTTTGcg > 1:805994/1‑148 (MQ=255)
aTTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCACCACTATTATTTGGTGTTGTCGGAGCAGCGTCTGCTTTGcc > 2:28303/1‑149 (MQ=255)
ttgtttggtGATGCATCTTCACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACT‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTgt < 2:24454/148‑1 (MQ=255)
ttgttgATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTgtcgtc < 2:583472/149‑1 (MQ=255)
tgttgATGCATCTACACTAGAATTGTTATTAGCTTGCTGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGtct < 2:66993/149‑1 (MQ=255)
tggtgATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATCATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGtct < 1:732678/146‑1 (MQ=255)
ttgATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCa > 2:1003842/1‑149 (MQ=255)
tGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATa < 1:416369/149‑1 (MQ=255)
gCATCTACACTAGAATTGTTATTAGCTTGCGGTTTCTCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATAc < 1:1006604/149‑1 (MQ=255)
cATCTACACTAGAATTGTTATTTGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACg < 1:290466/149‑1 (MQ=255)
cATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTCTTATCGGGTGTTGTCGGAGACGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACg > 1:149150/1‑149 (MQ=255)
ttACACTAGATTTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTa < 2:266304/148‑1 (MQ=255)
tACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGGTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGGCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAg < 1:464551/149‑1 (MQ=255)
acacTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAgg > 1:281419/1‑149 (MQ=255)
cacTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGt < 1:500241/149‑1 (MQ=255)
cTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTg > 2:1002309/1‑149 (MQ=255)
tAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGt < 2:1082406/149‑1 (MQ=255)
aaTTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTGGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCa > 2:4683/1‑149 (MQ=255)
aTTTTTATTAGCTTGCGGTTTATCATTTGTTTCATCAGTTGCTGATGTTGCTGGTGTGTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAg < 2:455834/149‑1 (MQ=255)
aTTGTTAGTAGCTTGCGGTTTATAAGTCGCATCATCAGTTGCGGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAg < 2:337286/149‑1 (MQ=255)
tGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTa < 2:213565/149‑1 (MQ=255)
tattaGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTAttt > 1:226048/1‑149 (MQ=255)
tattaGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGGTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTAttt < 1:876174/149‑1 (MQ=255)
attaGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGGTGTCCAGTAtttt > 1:1066024/1‑149 (MQ=255)
aGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTg > 1:1046645/1‑149 (MQ=255)
aGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTg > 1:871012/1‑149 (MQ=255)
ttGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGgtg > 1:599514/1‑149 (MQ=255)
ttGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTAATTTgtggtg > 2:374550/1‑149 (MQ=255)
tGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGgtgt < 1:78357/149‑1 (MQ=255)
cgttttATCATTTGCATCCTCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCTTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTg < 1:535875/146‑1 (MQ=255)
ggTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGc < 1:136072/149‑1 (MQ=255)
gTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGCa > 2:1035609/1‑149 (MQ=255)
gTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGCa < 1:387575/149‑1 (MQ=255)
gTTTATCATTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTACa > 2:127859/1‑149 (MQ=255)
aTTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCCCC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGCATTAGCAt < 1:67387/149‑1 (MQ=255)
aTTTGCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTTGCTTGCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTTCATTAGCAt > 1:700204/1‑149 (MQ=255)
gCATCATCGGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGGGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGCATTAGCATTTGa < 2:81580/149‑1 (MQ=255)
gCATCATCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGGTCCGTTAGGTGGTGCAGTATTTTCTGGTGTTGCATTAGCATTTGa > 1:1037918/1‑149 (MQ=255)
catcatCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGCATTAGCATTTGat > 2:498314/1‑148 (MQ=255)
catcatCAGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGCATTAGCATTTGaa > 2:965578/1‑149 (MQ=255)
catcaGTTGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGCATTAGCATTTGAAttt < 1:861853/149‑1 (MQ=255)
tGCTGATGTTTCTGTTGTTTCACC‑TGTTGCCGCATCACTACTAGTTGGTGGGGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGCATTAGCATTTGAATTTGCTGTTg < 1:28303/149‑1 (MQ=255)
tGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGCATTAGCATTTGAATTTGCTGTTg < 1:295678/149‑1 (MQ=255)
tGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGCATTAGCATTTGAATTTGCTGTTg < 1:428055/149‑1 (MQ=255)
tGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGCATTAGCATTTGAATTTGCTGTTg < 2:192745/149‑1 (MQ=255)
tGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGCATTAGCATTTGAATTTGCTGTTg < 2:1095414/149‑1 (MQ=255)
tGCTGATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGCATTAGCATTTGAATTTGCTGTTg < 1:844735/149‑1 (MQ=255)
tGCTGATGATACTGATCTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGACTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTATGTTGTCCAGTATTTTCTGGTGTTGCATTAGCATTTGAATTTGCTGTTg < 2:805994/149‑1 (MQ=255)
ttaTGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGCATTAGCATTTGAATTTGCTGTTGcat < 2:847588/147‑1 (MQ=255)
gATGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGCATTAGCATTTGAATTTGCTGTTGcatc < 1:645595/149‑1 (MQ=255)
aTGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGCATTAGCATTTGAATTTGCTGTTGcatca < 1:54062/149‑1 (MQ=255)
tGTTACTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGCATTAGCATTTGAATTTGCTGTTGcatcat < 2:392732/149‑1 (MQ=255)
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TTTATCAGTTGTGCCGTTATTAGTTGATTCTACTTCTGGTTTACTAGTTACATCGTTATCCATTGTCGGACTGTTTGTTGATGCATCTACACTAGAATTGTTATTAGCTTGCGGTTTATCATTTGCATCATCAGTTGCTGATGTTGCTGTTGTTTCACC‑TGTTGCCGCATCACTATTATTTGGTGTTGTCGGAGAAGCGTCTGCTTTGCCATTAGCTGTCGTCTCAGATACGTTAGGTTGTCCAGTATTTTCTGGTGTTGCATTAGCATTTGAATTTGCTGTTGCATCAT > USA300TCH1516_ALE/2279560‑2279849
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
