Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R2
|
489 |
0.0 |
1652083 |
58.3% |
963164 |
55.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
511,674 |
C→T |
V270V (GTC→GTT) |
ybaS → |
predicted glutaminase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 511,674 | 0 | C | T | 100.0%
| 993.7
/ NA
| 342 | V270V (GTC→GTT) | ybaS | predicted glutaminase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (342/0); total (342/0) |
Only 100 of 342 total aligned reads displayed.
GCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTCCCTGGAGTGATGGGAATTGCCGCGTTCTCACCACCGCTGGACGAAGATG > W3110S.gb/511637‑511723
|
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCGTGGCGTGGTggg > 1:1513975/1‑52 (MQ=37)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:608598/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:1252227/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:218890/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:74379/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:210008/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:194901/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:56542/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:1344104/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:1575155/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:478751/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:1410489/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:67356/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:1445181/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:628794/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:1490916/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:1495192/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:649212/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:424738/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:988473/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:982164/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:380239/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:955411/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:943042/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:366994/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:1077708/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:914677/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:335392/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:847926/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:82251/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:311163/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:1178278/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:469453/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:267217/1‑52 (MQ=38)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGtttt > 1:397919/1‑38 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGtttt > 1:966514/1‑38 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTtttc > 1:69289/1‑41 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGaa > 1:1002373/1‑57 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:759027/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:290179/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:417568/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:925103/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:896783/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:453691/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:860907/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:810479/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:79965/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:791708/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:766308/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:65889/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:732768/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:731254/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:489502/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:500091/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:534677/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:704937/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:573915/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:601546/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:688081/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:66919/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1123106/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1328372/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:131408/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1304419/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1276436/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1230480/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:122303/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1207628/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1172174/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1148547/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1340262/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1112431/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1104008/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1088911/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1069246/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1055103/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1041089/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1031562/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1025087/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1018252/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1593132/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:351108/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:343661/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:30886/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:249457/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:182715/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:171090/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1648830/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1625993/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1614745/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:387315/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1563561/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1558848/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1542999/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1522529/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1460642/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1423280/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1365862/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1357746/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaa > 1:631209/1‑59 (MQ=255)
|
GCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTCCCTGGAGTGATGGGAATTGCCGCGTTCTCACCACCGCTGGACGAAGATG > W3110S.gb/511637‑511723
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
