Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R2
|
489 |
0.0 |
1652083 |
58.3% |
963164 |
55.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
511,680 |
A→C |
G272G (GGA→GGC) |
ybaS → |
predicted glutaminase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 511,680 | 0 | A | C | 100.0%
| 998.7
/ NA
| 341 | G272G (GGA→GGC) | ybaS | predicted glutaminase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (341/0); total (341/0) |
Only 100 of 341 total aligned reads displayed.
GCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTCCCTGGAGTGATGGGAATTGCCGCGTTCTCACCACCGCTGGACGAAGATG > W3110S.gb/511637‑511723
|
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:1618266/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:1328993/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:1344104/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:1445181/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:1463035/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:1490916/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:67356/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:154800/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:649212/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:1582659/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:628794/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:988473/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:614998/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:1649118/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:202138/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:210008/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:218989/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:56542/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:335392/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:366994/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:469453/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:400870/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:955411/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:914677/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:1075164/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:943042/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:131441/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:847926/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:82251/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:1225024/1‑52 (MQ=38)
gCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTTCCTGGCGTGATggg > 1:982164/1‑52 (MQ=38)
cTGGCTGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:320530/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGtttt > 1:966514/1‑38 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGt > 1:1500039/1‑37 (MQ=38)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTtttc > 1:69289/1‑41 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTtttc > 1:1361942/1‑41 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGaa > 1:1002373/1‑57 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:484721/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:489502/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:860907/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:506268/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:534677/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:453691/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:290179/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:925103/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:429766/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:577264/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:601546/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:896783/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:812052/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:79965/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:65889/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:791708/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:670688/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:766308/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:759027/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:75400/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:688081/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:704937/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:732768/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:731254/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1172514/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:417568/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1340510/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1307247/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1283016/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1254213/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1230480/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1213343/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1181731/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1377065/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1148547/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1123858/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1115070/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:110529/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1081160/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1045312/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1025198/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1018252/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:185522/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:387315/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:381702/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:351108/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:344495/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:30886/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:268966/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:249457/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1416999/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:171090/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1625993/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1593132/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1572374/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1558848/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1522529/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1515662/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaag > 1:1425085/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaa > 1:631209/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGaa > 1:1094928/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACCACCGCTGGACGAAGa > 1:1055104/1‑59 (MQ=255)
cTGGCGGTCGTTCCTGGCGTGATGGGAATTGCCGCGTTTTCACAACCGCTGGACGAAGaag > 1:103350/1‑59 (MQ=255)
|
GCAAAAGCGGTGTAGGTGGCGGTATTCTGGCGGTCGTCCCTGGAGTGATGGGAATTGCCGCGTTCTCACCACCGCTGGACGAAGATG > W3110S.gb/511637‑511723
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
