Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F28 I1 R1
|
58 |
121.6 |
3649812 |
78.1% |
2850503 |
56.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
1,962,687 |
T→C |
intergenic (‑170/+115) |
epd ← / ← yggC |
D‑erythrose 4‑phosphate dehydrogenase/conserved hypothetical protein with nucleoside triphosphate hydrolase domain |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,962,687 | 0 | T | C | 100.0%
| 186.6
/ NA
| 49 | intergenic (‑170/+115) | epd/yggC | D‑erythrose 4‑phosphate dehydrogenase/conserved hypothetical protein with nucleoside triphosphate hydrolase domain |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (21/28); total (21/28) |
TCGACTGAAACGCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGTTTGTCCAGCCGAAGAAGACAT > minE/1962636‑1962708
|
tCGACTGAAACGCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGc > 1:2557524/1‑61 (MQ=255)
tCGACTGAAACGCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGc > 1:943350/1‑61 (MQ=255)
tCGACTGAAACGCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGc > 1:646040/1‑61 (MQ=255)
tCGACTGAAACGCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGc > 1:581678/1‑61 (MQ=255)
tCGACTGAAACGCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGc > 1:576462/1‑61 (MQ=255)
tCGACTGAAACGCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGc > 1:497587/1‑61 (MQ=255)
tCGACTGAAACGCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGc > 1:3386459/1‑61 (MQ=255)
tCGACTGAAACGCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGc > 1:3250965/1‑61 (MQ=255)
tCGACTGAAACGCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGc > 1:3127377/1‑61 (MQ=255)
tCGACTGAAACGCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGc > 1:2956645/1‑61 (MQ=255)
tCGACTGAAACGCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGc > 1:2584694/1‑61 (MQ=255)
tCGACTGAAACGCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGc > 1:2424440/1‑61 (MQ=255)
tCGACTGAAACGCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGc > 1:2317637/1‑61 (MQ=255)
tCGACTGAAACGCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGc > 1:1945477/1‑61 (MQ=255)
tCGACTGAAACGCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGc > 1:1898228/1‑61 (MQ=255)
tCGACTGAAACGCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGc > 1:1893949/1‑61 (MQ=255)
tCGACTGAAACGCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGc > 1:1472458/1‑61 (MQ=255)
tCGACTGAAACGCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGc > 1:172540/1‑61 (MQ=255)
tCGACTGAAACGCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGc > 1:1359184/1‑61 (MQ=255)
tCGACTGAAACGCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGc > 1:127326/1‑61 (MQ=255)
tCGACTGAAACGCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGc > 1:17454/1‑61 (MQ=255)
gCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGCCGAAGTAGACAt < 1:3339838/62‑1 (MQ=255)
gCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGCCGAAGAAGACAt < 1:3623195/62‑1 (MQ=255)
gCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGCCGAAGAAGACAt < 1:3371855/62‑1 (MQ=255)
gCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGCCGAAGAAGACAt < 1:3567833/62‑1 (MQ=255)
gCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGCCGAAGAAGACAt < 1:3150161/62‑1 (MQ=255)
gCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGCCGAAGAAGACAt < 1:1325330/62‑1 (MQ=255)
gCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGCCGAAGAAGACAt < 1:1214009/62‑1 (MQ=255)
gCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGCCGAAGAAGACAt < 1:1202115/62‑1 (MQ=255)
gCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGCCGAAGAAGACAt < 1:660689/62‑1 (MQ=255)
gCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGCCGAAGAAGACAt < 1:808231/62‑1 (MQ=255)
gCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGCCGAAGAAGACAt < 1:924945/62‑1 (MQ=255)
gCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGCCGAAGAAGACAt < 1:1089580/62‑1 (MQ=255)
gCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGCCGAAGAAGACAt < 1:3197600/62‑1 (MQ=255)
gCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGCCGAAGAAGACAt < 1:1586520/62‑1 (MQ=255)
gCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGCCGAAGAAGACAt < 1:3107146/62‑1 (MQ=255)
gCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGCCGAAGAAGACAt < 1:2959224/62‑1 (MQ=255)
gCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGCCGAAGAAGACAt < 1:2744640/62‑1 (MQ=255)
gCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGCCGAAGAAGACAt < 1:2616936/62‑1 (MQ=255)
gCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGCCGAAGAAGACAt < 1:1059851/62‑1 (MQ=255)
gCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGCCGAAGAAGACAt < 1:1749594/62‑1 (MQ=255)
gCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGCCGAAGAAGACAt < 1:2264151/62‑1 (MQ=255)
gCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGCCGAAGAAGACAt < 1:225005/62‑1 (MQ=255)
gCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGCCGAAGAAGACAt < 1:2164615/62‑1 (MQ=255)
gCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGCCGAAGAAGACAt < 1:2082925/62‑1 (MQ=255)
gCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGCCGAAGAAGACAt < 1:2066445/62‑1 (MQ=255)
gCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGTCCAGCCGAAGAAGACAt < 1:1849909/62‑1 (MQ=255)
gCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGCTTGGCCAGCCGAAGAAGACAt < 1:1745401/62‑1 (MQ=255)
gTGGAATAAAAGGAATGCTTGTCCAGCCGAAGAAGACAt < 1:826239/39‑1 (MQ=255)
|
TCGACTGAAACGCTTCAGCTAGGATAAGCGAAACGTGGAATAAAAGGAATGTTTGTCCAGCCGAAGAAGACAT > minE/1962636‑1962708
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
