Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F17 I0 R1
|
87 |
56.5 |
4283937 |
98.6% |
4223961 |
62.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| MC JC |
W3110S.gb |
654,214 |
Δ1,199 bp |
100% |
|
[dcuC]–[dcuC] |
[dcuC], insH, [dcuC] |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
W3110S.gb |
654214–655411 |
655412 |
2–1199 |
49 [0] |
[0] 49 |
[dcuC]–[dcuC] |
[dcuC],insH,[dcuC] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
W3110S.gb |
= 654213 | 0 (0.000) | 34 (0.820) |
24/92 |
NT |
100% |
coding (70/477 nt) |
dcuC |
anaerobic C4‑dicarboxylate transport |
| ? | W3110S.gb |
655413 = |
0 (0.000) | coding (978/1092 nt) |
dcuC |
anaerobic C4‑dicarboxylate transport |
GATK/CNVnator alignment
N/A
