Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F21 I0 R1
|
2169 |
63.0 |
3952800 |
76.2% |
3012033 |
62.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
2,595,482 |
T→G |
22.6% |
G372G (GGA→GGC) |
arsB ← |
arsenite/antimonite transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,595,482 | 0 | T | G | 22.6%
| 149.9
/ 74.0
| 111 | G372G (GGA→GGC) | arsB | arsenite/antimonite transporter |
| Reads supporting (aligned to +/- strand): ref base T (43/43); new base G (15/10); total (58/53) |
| Fisher's exact test for biased strand distribution p-value = 4.96e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.31e-01 |
Only 100 of 120 total aligned reads displayed.
ATATTCTTCTGCGAAAGTACGTGCAGCCAGAGTAGCGTAGCCAGGCTACCAATTGGGGTAATTTTCGGTCCCAAATCGCAGCCAATCACATTGGCATAAACCATCGCTTCTTTGATAACGCCAGATGCCGTGCTGCCA > minE/2595414‑2595551
|
atatTCTTCTGCGAAAGTACGTGCAGCCAGAGTAGCGTAGCCAGGCTACCAATTGGGGTAATTTTCGGTc < 1:695482/70‑1 (MQ=255)
tatTCTTCTGCGAAAGTACGTGCAGCCAGAGTAGCGTAGCCAGGCTACCAATTGGGGTAATTTTCGGTcc > 1:3678810/1‑70 (MQ=255)
atTCTTCTGCGAAAGTACGTGCAGCCAGAGTAGCGTAGCCAGGCTACCAATTGGGGTAATTTTCGGTccc > 1:769487/1‑70 (MQ=255)
ttctGCGAAAGTACGTGCAGCCAGAGTAGCGTAGCCAGGCTACCAATTGGGGTAATTTTCGGTCCCAAATc > 1:3061286/1‑71 (MQ=255)
ctGCGAAAGTACGTGCAGCCAGAGTAGCGTAGCCAGGCTACCAATTGGGGTAATTTTCGGTCCCAAATCg < 1:2438638/70‑1 (MQ=255)
ctGCGAAAGTACGTGCAGCCAGAGTAGCGTAGCCAGGCTACCAATTGGGGTAATTTTCGGTCCCAAATCg < 1:1535688/70‑1 (MQ=255)
ctGCGAAAGTACGTGCAGCCAGAGTAGCGTAGCCAGGCTACCAATTGGGGTAATTTTCGGTCCCAAATCg > 1:2872330/1‑70 (MQ=255)
tGCGAAAGTACGTGCAGCCAGAGTAGCGTAGCCAGGCTACCAATTGGGGTAATTTTCGGTCCCAAATCg > 1:1985086/1‑69 (MQ=255)
gCGAAAGTACGTGCAGCCAGAGTAGCGTAGCCAGACTACCAATTGGGGTAATTTTCGGTCCCAAATc < 1:3885812/67‑1 (MQ=255)
gAAAGTACGTGCAGCCAGAGTAGCGTAGCCAGGCTACCAATTGGGGTAATTTTCGGTCCCAAATCGCAGc > 1:469164/1‑70 (MQ=255)
aaaGTACGTGCAGCCAGAGTAGCGTAGCCAGGCTACCAATTGGGGTAATTTTCGGTCCCAAATCGCAGc > 1:1781988/1‑69 (MQ=255)
aaGTACGTGCAGCCAGAGTAGCGTAGCCAGGCTACCAATTGGGGTAATTTTCGGTCCCAAATCGCAGCCaa > 1:1406051/1‑71 (MQ=255)
gTACGTGCAGCCAGAGTAGCGTAGCCAGGCTACCAATTGGGGTAATTTTCGGTCCCAAATCGCAGCCAATc < 1:1687020/71‑1 (MQ=255)
aCGTGCAGCCAGAGTAGCGTAGCCAGGCTACCAATTGGGGTAATTTTCGGTCCCAAATCGCAGCCAATca > 1:1281937/1‑70 (MQ=255)
catGCAGCCACAGCAGAGTTGCCAGACTGCCAATCGGGGTGATTTTCGGGCCTAAATCACAGCCAATcaca > 1:751980/3‑71 (MQ=255)
cGTGCAGCCAGAGTAGCGTAGCCAGGCTACCAATTGGGGTAATTTTCGGTCCCAAATCGCAGCCAATcaca > 1:1926630/1‑71 (MQ=255)
cGTGCAGCCAGAGTAGCGTAGCCAGGCTACCAATTGGGGTAATTTTCGGTCCCAAATCGCAGCCAATcaca < 1:272622/71‑1 (MQ=255)
cGTGCAGCCAGAGTAGCGTAGCCAGGCTACCAATTGGGGTAATTTTCGGTCCCAAATCGCAGCCAATcaca < 1:3130744/71‑1 (MQ=255)
gTGCAGCCAGAGTAGCGTAGCCAGGCTACCAATTGGGGTAATTTTCGGTCCCa < 1:114021/53‑1 (MQ=255)
gTGCAGCCAGAGTAGCGTAGCCAGGCTACCAATTGGGGTAATTTTCGGTCCCAAATCGCAGCCAATCACAt < 1:3619878/71‑1 (MQ=255)
gaaGCCAGAGTAGCGTAGCCAGGCTACCAATTGGGGTAATTTTCGGTCCCAAATCGCAGCCAATCACATTg > 1:3682967/3‑71 (MQ=255)
gCAGCCAGAGTAGCGTAGCCAGGCTACCAATTGGGGTAATTTTCGGTCCCAAATCGCAGCCAATCACATTg > 1:1279832/1‑71 (MQ=255)
gCAGCCAGAGTAGCGTAGCCAGGCTACCAATTGGGGTAATTTTCGGTCCCAAATCGCAGCCAATCACATTg > 1:328935/1‑71 (MQ=255)
gCAGCCACAGCAGAGTTGCCAGACTGCCAATCGGGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTg > 1:3239388/1‑71 (MQ=255)
gCAGCCACAGCAGAGTTGCCAGACTGCCAATCGGGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTg > 1:3045573/1‑71 (MQ=255)
cAGCCAGAGTAGCGTAGCCAGGCTACCAATTGGGGTAATTTTCGGTCCCAAATCGCAGCCAATCACATTg < 1:831074/70‑1 (MQ=255)
cAGCCAGAGTAGCGTAGCCAGGCTACCAATTGGGGTAATTTTCGGTCCCAAATCGCAGCCAATCACATTg < 1:1043247/70‑1 (MQ=255)
aGCCAGAGTAGCGTAGCCAGGCTACCAATTGGGGTAATTTTCGGTCCCAAATCGCAGCCAATCACATTg < 1:2735754/69‑1 (MQ=255)
gCCAGAGTAGCGTAGCCAGGCTACCAATTGGGGTAATTTTCGGTCCCAAATc < 1:3476446/52‑1 (MQ=255)
cAGAGTAGCGTAGCCAGGCTACCAATTGGGGTAATTTTCGGTCCCAAATCGCAGCCAATCACATTGGCATa < 1:3680750/71‑1 (MQ=255)
agagTAGCGTAGCCAGGCTACCAATTGGGGTAATTTTCGGTCCCAAATCGCAGCCAATCACATTGGCATa > 1:927278/1‑70 (MQ=255)
gagTAGCGTAGCCAGGCTACCAATTGGGGTAATTTTCGGTCCCAAATCGCAGCCAATcaca < 1:2372881/61‑1 (MQ=255)
gagTAGCGTAGCCAGGCTACCAATTGGGGTAATTTTCGGTCCCAAATCGCAGCCAATCACAtt > 1:533963/1‑63 (MQ=255)
agTAGCGTAGCCAGGCTACCAATTGGGGTAATTTTCGGTCCCAAATCGCAGCCAATCACATTGGCATaaa > 1:2420487/1‑70 (MQ=255)
agTAGCGTAGCCAGGCTACCAATTGGGGTAATTTTCGGTCCCAAATCGCAGCCAATCACATTGGCATAAAc > 1:65735/1‑71 (MQ=255)
gtagcgtagcCAGGCTACCAATTGGGGTAATTTTCGGTCCCAAATCGCAGCCAATCACATTGGCATAAAcc < 1:2796306/71‑1 (MQ=255)
tagcgtagcCAGGCTACCAATTGGGGTAATTTTCGGt > 1:1892548/1‑37 (MQ=255)
tagcgtagcCAGGCTACCAATTGGGGTAATTTTCGGTCCCAAATCGCAGCCAATCACATTGGCATAAACCa < 1:1573024/71‑1 (MQ=255)
agcgtagcCAGGCTACCAATTGGGGTAATTTTCGGTCCCAAATCGCAGCCAATCACATTGGCATAAACCa < 1:1378962/70‑1 (MQ=255)
agcgtagcCAGGCTACCAATTGGGGTAATTTTAGGTCCCAAATc > 1:43043/1‑44 (MQ=255)
gcgtagcCAGGCTACCAATTGGGGTAATTTTCGGTCCCAAATCGCAGCCAATca < 1:2354634/54‑1 (MQ=255)
gcgtagcCAGGCTACCAATTGGGGTAATTTTCGGTCCCAAATCGCAGCCAATCACATTGGCATAAACCATc > 1:2131489/1‑71 (MQ=255)
cgtagcCAGGCTACCAATTGGGGTAATTTTCGGTCCCAAATCGCAGCCAATc < 1:300475/52‑1 (MQ=255)
gcCAGGCTACCAATTGGGGTAATTTTCGGTCCCAAATCGCAGcc < 1:807950/44‑1 (MQ=255)
gcCAGACTGCCAATCGGGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCAtt < 1:3134047/66‑2 (MQ=255)
cAGACTGCCAATCGGGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGcctctt < 1:3613558/71‑1 (MQ=255)
aGGCTACCAATTGGGGTAATTTTCGGTCCCAAATCg < 1:2198133/36‑1 (MQ=255)
cTACCAATTGGGGTAATTTTCGGTCCCAAATCGCAGCCAATCACATTGGCATAAACCATCGCTTCTTTGa > 1:3749195/1‑70 (MQ=255)
tACCAATTGGGGTAATTTTCGGTCCCAAATCGCAGCCAATCACATTGGCATAAACCATCGCTTCTTTGAt > 1:1270227/1‑70 (MQ=255)
ccAATTGGGGTAATTTTCGGTCCCAAATCGCAGCCAATCACATTGGCATAAACCATCGCTTCTTTGATaa < 1:3592426/70‑1 (MQ=255)
ccAATTGGGGTAATTTTCGGTCCCAAATCGCAGCCAATCACATTGGCATAAACCATCGCTTCTTTGATAAc > 1:2744289/1‑71 (MQ=255)
ccAATTGGGGTAATTTTCGGTCCCAAATCGCAGCCAATCACATTGGCATAAACCATCGCTTCTTTGATAAc < 1:686166/71‑1 (MQ=255)
ccAATCGGGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGacga < 1:1759982/70‑4 (MQ=255)
aaTCGGGGTGATTTTCGGGCCTAAATCACAGCCGATCACATTGGCATAAATCATTGCCTCTTTGACGACGc > 1:1067913/1‑71 (MQ=255)
aaTCGGGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGc > 1:1142962/1‑71 (MQ=255)
aaTCGGGGTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGc < 1:2056505/71‑1 (MQ=255)
aTTGGGGTAATTTTCGGTCCCAAATCGCAGCCAATCACATTGGCATAAACCATCGCTTCTTTGATAACGcc < 1:448498/71‑1 (MQ=255)
ttGGGGTAATTTTCGGTCCCAAATCGCAGCCAATCACATTGGCATAAACCATCGCTTCTTTGATAACGCCa < 1:966097/71‑1 (MQ=255)
tcggggTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGc > 1:3146126/3‑69 (MQ=255)
cggggTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGc > 1:3469152/2‑42 (MQ=25)
cggggTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGc > 1:3645109/2‑42 (MQ=25)
gggTGATTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAgtc < 1:1039489/71‑3 (MQ=255)
gTAATTTTCTGTCCCAAATCGCAGCCAATCACATTGGCATAAACCATCGCTTCTTTGATAACGCCAGATGc > 1:3629754/1‑71 (MQ=255)
gTAATTTTCGGTCCCAAATCGCAGCCAATCACATTGGCATAAACCATc < 1:45937/48‑1 (MQ=255)
tAATTTTCGGTCCCAAATCGCAGCCAATCACATTGGCATAAAcc < 1:3684269/44‑1 (MQ=255)
tAATTTTCGGTCCCAAATCGCAGCCAATCACATTGGCATAAACCa < 1:963935/45‑1 (MQ=255)
tAATTTTCGGTCCCAAATCGCAGCCAATCACATTGGCATAAACCATCGCTTCTTTGATAACGCCAGATGcc < 1:1716718/71‑1 (MQ=255)
gaTTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCg > 1:2310222/2‑71 (MQ=255)
aaTTTTCGGTCCCAAATCGCAGCCAATCACATTGGCa > 1:920003/1‑37 (MQ=255)
aaTTTTCGGTCCCAAATCGCAGCCAATCACATTGGCATAAACCATCGCTTCTTTGATAACGCCAGATGCCg > 1:3548375/1‑71 (MQ=255)
aTTTTCGGTCCCAAATCGCAGCCAATCACATTGGCATAAACCATc > 1:1823567/1‑45 (MQ=255)
aTTTTCGGTCCCAAATCGCAGCCAATCACATTGGCATAAACCATc > 1:3061579/1‑45 (MQ=255)
aTTTTCGGTCCCAAATCGCAGCCAATCACATTGGCATAAACCATCGCTTCTTTGATAAGGCCAGATGCCGt > 1:3657593/1‑71 (MQ=255)
aTTTTCGGTCCCAAATCGCAGCCAATCACATTGGCATAAACCATCGCTTCTTTGATAACGCCAGATGCCg < 1:3725864/70‑1 (MQ=255)
aTTTTCGGTCCCAAATCGCAGCCAATCACATTGGCATAAACCATCGCTTCTTTGATAACGCCAGATGCCg < 1:3632583/70‑1 (MQ=255)
aTTTTCGGTCCCAAATCGCAGCCAATCACATTGGCATAAACCATCGCTTCTTTGATAACGCCAGATGCCGt > 1:2282745/1‑71 (MQ=255)
aTTTTCGGTCCCAAATCGCACCCAATCACATTGGCATAAACCATc > 1:3530414/1‑45 (MQ=255)
aTTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCttt > 1:3659092/1‑53 (MQ=255)
aTTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAg < 1:373726/64‑1 (MQ=255)
aTTTTCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAg < 1:2776004/64‑1 (MQ=255)
ttttCGGTCCCAAATCGCAGCCAATCACATTGGCATAAACCATCGctt < 1:1153299/48‑1 (MQ=255)
ttttCGGGCCTAAATCACAGCTAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGta < 1:281000/71‑2 (MQ=255)
ttttCGGGCCTAAATCACAGCCAATCACATTGGCATaaatc < 1:636744/41‑3 (MQ=255)
tttCGGTCCCAAATCGCAGCCAATCACATTGGCATaa > 1:152663/1‑37 (MQ=255)
ttCGGTCCCAAATCGCAGCCAATCACATTGGCATAAACCATCGCTTCTTTGATAACGCCAGATGCCGtgct > 1:1318215/1‑71 (MQ=255)
ttCGGTCCCAAATCGCAGCCAATCACATTGGCATAAACCATCGCTTCTTTGATAACGCCAGATGCCGtgct > 1:1834918/1‑71 (MQ=255)
tCGGTCCCAAATCGCAGCCAATCACATTGGCATAAACCATCGCTTCTTTGATAACGCCAGATGCCGtgctg > 1:1079007/1‑71 (MQ=255)
tCGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGtactc > 1:1335928/1‑70 (MQ=255)
cGGGCCTAAATCACAGCCAATCACATTGGCATAAATCATTGCCTCTTTGACGACGCCAGTCGCCGtactc < 1:1014757/70‑2 (MQ=255)
ggTCCCAAATCGCAGCCAATCACATTGGCATAAACCATCGCTTCTTTGATAACGCCAGATGCCGtgctgc > 1:1098596/1‑70 (MQ=255)
ggTCCCAAATCGCAGCCAATCACATTGGCATAAACCATCGCTTCTTTGATAACGCCAGATGCCGtgctgc < 1:2603902/70‑1 (MQ=255)
ggTCCCAAATCGCAGCCAATCACATTGGCATAAACCATCGCTTCTTTGATAACGCCAGATGCCGTGCTGcc < 1:2138816/71‑1 (MQ=255)
gTCCCAAATCGCAGCCAATCACATTGGCATAAACCATCGCTTCTTTGATAACGCCAGATGCCGTGCTGCCa < 1:3081292/71‑1 (MQ=255)
tCCCAAATCGCAGCCAATCACATTGGCATAAACCATCGCTTCTTTg < 1:803192/46‑1 (MQ=255)
tCCCAAATCGCAGCCAATCACATTGGCATAAACCATCGCTTCTTTg < 1:2384325/46‑1 (MQ=255)
tCCCAAATCGCAGCCAATCACATTGGCATAAACCATCGCTTCTTTg < 1:2643761/46‑1 (MQ=255)
tCCCAAATCGCAGCCAATCACATTGGCATAAACCATCGCTTCTTTGa > 1:884215/1‑47 (MQ=255)
tCCCAAATCGCAGCCAATCACATTGGCATAAACCATCGCTTCTTTGATAACGCCat < 1:3070565/56‑2 (MQ=255)
tCCCAAATCGCAGCCAATCACATTGGCATAAACCATCGCTTCTTTGATAACGCCAGATGCCGtg < 1:1221579/64‑1 (MQ=255)
tCCCAAATCGCAGCCAATCACATTGGCATAAACCATCGCTTCTTTGATAACGCCAGATGCCGtg < 1:3699881/64‑1 (MQ=255)
|
ATATTCTTCTGCGAAAGTACGTGCAGCCAGAGTAGCGTAGCCAGGCTACCAATTGGGGTAATTTTCGGTCCCAAATCGCAGCCAATCACATTGGCATAAACCATCGCTTCTTTGATAACGCCAGATGCCGTGCTGCCA > minE/2595414‑2595551
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
