Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F21 I0 R2
|
316 |
65.6 |
5147759 |
97.4% |
5013917 |
60.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,254,608 |
T→C |
25.0% |
intergenic (+46/+54) |
dhaR → / ← ycgV |
predicted DNA‑binding transcriptional regulator, dihydroxyacetone/predicted adhesin |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,254,608 | 0 | T | C | 25.0%
| 120.0
/ 43.8
| 68 | intergenic (+46/+54) | dhaR/ycgV | predicted DNA‑binding transcriptional regulator, dihydroxyacetone/predicted adhesin |
| Reads supporting (aligned to +/- strand): ref base T (25/26); new base C (14/3); total (39/29) |
| Fisher's exact test for biased strand distribution p-value = 2.28e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GCCGGGTATGAAAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGCACTTAAAAGCTGAAG > W3110S.gb/1254552‑1254674
|
gcCGGGTATGAAAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTaa > 1:4648407/1‑71 (MQ=255)
gTATGAAAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATCCCGGCGCACGCTAACAAtt < 1:4035846/71‑1 (MQ=255)
aTGAAAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAAtttt > 1:1707536/1‑71 (MQ=255)
tGAAAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAAtttt > 1:2214039/1‑70 (MQ=255)
tGAAAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAAtttt > 1:4967671/1‑70 (MQ=255)
tGAAAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATTCAGGCGCACGCTAACAAtt < 1:4193761/68‑1 (MQ=255)
gAAAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGc < 1:711493/59‑1 (MQ=255)
gAAAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGc < 1:4445738/59‑1 (MQ=255)
gAAAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGc < 1:54845/59‑1 (MQ=255)
aaaGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGc < 1:211586/58‑1 (MQ=255)
aaaGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAg > 1:1013009/1‑71 (MQ=255)
aaaGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATCCCGGCGCACGCTAACAAt > 1:4365789/1‑65 (MQ=255)
aaaGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATCCCGGCGCACGCTAACAATTTTCAg > 1:3949512/1‑71 (MQ=255)
aGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCa > 1:3304062/1‑71 (MQ=255)
cAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATCCCGGCGCACGCTAACAATTTTCAGCATCg > 1:3078217/1‑71 (MQ=255)
cAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATCCCGGCGCACGCTAACAATTTTCAGCATCg > 1:1962440/1‑71 (MQ=255)
aGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATCCCGGCGCACGCTAACAATTTTCAGCATCGt > 1:369874/1‑71 (MQ=255)
gAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGtt > 1:4354077/1‑71 (MQ=255)
aaaCGATTTCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGttt < 1:1321905/71‑1 (MQ=255)
aCGATTTCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACATTTTTCAGCATCGttt < 1:2499612/69‑1 (MQ=255)
cGATTTCTGATACATCAGAGTGATCTGTATTTCATCCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAg < 1:3614026/71‑1 (MQ=255)
ttCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACaa > 1:2548489/1‑49 (MQ=255)
ttCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCa < 1:1074950/58‑1 (MQ=255)
ttCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCa < 1:1132468/58‑1 (MQ=255)
ttCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCt > 1:509366/1‑71 (MQ=255)
ttCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCt > 1:3793157/1‑71 (MQ=255)
tCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTaa > 1:612544/1‑65 (MQ=255)
tCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTaa > 1:3906829/1‑65 (MQ=255)
tCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCt < 1:4516939/70‑1 (MQ=255)
tCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCAAGCTAACAATTTTCAGCATCGTTTaa > 1:3790400/1‑65 (MQ=255)
tGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTaa < 1:4169870/63‑1 (MQ=255)
tGATACATCAGAGTGATCTGTATTTCATTCAGGCGCACGCTAACAATTTTCAGCATCGTTTaa < 1:1363685/63‑1 (MQ=255)
aTACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTg < 1:3230006/68‑1 (MQ=255)
aTACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTg < 1:4245431/68‑1 (MQ=255)
aTACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCt < 1:3563600/71‑1 (MQ=255)
tCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATccc > 1:535011/1‑71 (MQ=255)
agagTGATCTGTATTTCATCCCGGCGCACGCTAACAATTTTCAg > 1:247429/1‑44 (MQ=255)
agagTGATCTGTATTTCATCCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAg > 1:3552388/1‑55 (MQ=255)
gagTGATCTGTATTTCATCCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATcc < 1:3221555/67‑1 (MQ=255)
gTGATCTGTATTTCATCCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCg > 1:3114633/1‑67 (MQ=255)
tGATCTGTATTTCATTCCGGAGCACGCTAACAATTTTCa > 1:1711717/1‑39 (MQ=255)
aTCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGc > 1:1433139/1‑39 (MQ=255)
aTCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCa < 1:3204355/40‑1 (MQ=255)
aTCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCa < 1:564868/40‑1 (MQ=255)
aTCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGCACTTa < 1:3526543/70‑1 (MQ=255)
cTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGtt > 1:381428/1‑43 (MQ=255)
cTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGtt > 1:318547/1‑43 (MQ=255)
cTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGCACTTaa > 1:4278766/1‑69 (MQ=255)
tGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATc < 1:4823642/39‑1 (MQ=255)
tGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATc < 1:477840/39‑1 (MQ=255)
tGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATc < 1:4687244/39‑1 (MQ=255)
tGTATTTCATCCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATc > 1:1341501/1‑58 (MQ=255)
tGTATTTCATCCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGCACTTAAAAg > 1:5130922/1‑71 (MQ=255)
tATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGCACTTaaaa < 1:3709719/68‑1 (MQ=255)
tATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGCACTTaaa < 1:2317020/67‑1 (MQ=255)
tATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGCACTTaaa < 1:2099215/67‑1 (MQ=255)
tATTTCATCCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGCACTTAAAAGCt > 1:4137761/1‑71 (MQ=255)
tttCATTCCGGCGCACGCTAACAATTTTCAGCATCGttt > 1:2396896/1‑39 (MQ=255)
tttCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGCACTTAAAAGCTg > 1:1786912/1‑70 (MQ=255)
tttCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGCACTTAAAAGCTg > 1:260836/1‑70 (MQ=255)
tttCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGCACTTAAAAGCTg < 1:4121916/70‑1 (MQ=255)
tttCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGCACTTAAAAGCTg < 1:126061/70‑1 (MQ=255)
tttCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGCACTTAAAAGCTg > 1:3404637/1‑70 (MQ=255)
tttCATCCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGc > 1:1019131/1‑45 (MQ=255)
tCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTGTCCCGCACTTAAAAGCTGAAg > 1:2122335/1‑71 (MQ=255)
tCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGCACTTAAAAGCTGAAg > 1:3322637/1‑71 (MQ=255)
tCATCCCGGCGCACGCTAACAATTTTCAGCATCGTTTaa > 1:4920989/1‑39 (MQ=255)
tCATCCCGGCGCACGCTAACAATTTTCAGCATCGTTTaa > 1:1077312/1‑39 (MQ=255)
|
GCCGGGTATGAAAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGCACTTAAAAGCTGAAG > W3110S.gb/1254552‑1254674
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
