Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I2 R1
|
721 |
0.0 |
1472758 |
54.8% |
807071 |
56.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,254,608 |
T→C |
intergenic (+46/+54) |
dhaR → / ← ycgV |
predicted DNA‑binding transcriptional regulator, dihydroxyacetone/predicted adhesin |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,254,608 | 0 | T | C | 100.0%
| 28.2
/ NA
| 12 | intergenic (+46/+54) | dhaR/ycgV | predicted DNA‑binding transcriptional regulator, dihydroxyacetone/predicted adhesin |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (12/0); total (12/0) |
CGGGTATGAAAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCA > W3110S.gb/1254554‑1254616
|
cGGGTATGAATGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATCCCGgcgc > 1:1156345/1‑62 (MQ=255)
cGGGTATGAAAGACAGAAACGATTTCTGGTACATCAGAGTGATCTGTATTTCATCCCGgcgc > 1:461534/1‑62 (MQ=255)
cGGGTATGAAAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATCCCGgcgc > 1:1138840/1‑62 (MQ=255)
cGGGTATGAAAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATCCCGgcgc > 1:1278103/1‑62 (MQ=255)
cGGGTATGAAAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATCCCGgcgc > 1:129645/1‑62 (MQ=255)
cGGGTATGAAAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATCCCGgcgc > 1:130658/1‑62 (MQ=255)
cGGGTATGAAAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATCCCGgcgc > 1:1383704/1‑62 (MQ=255)
cGGGTATGAAAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATCCCGgcgc > 1:1392914/1‑62 (MQ=255)
cGGGTATGAAAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATCCCGgcgc > 1:541322/1‑62 (MQ=255)
cGGGTATGAAAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATCCCGgcgc > 1:673185/1‑62 (MQ=255)
cGGGTATGAAAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATCCCGgcg > 1:1334872/1‑61 (MQ=255)
cGGGTATG‑AAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATCCCGGCGCa > 1:1034952/1‑62 (MQ=255)
|
CGGGTATGAAAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCA > W3110S.gb/1254554‑1254616
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
