Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I2 R1
|
721 |
0.0 |
1472758 |
54.8% |
807071 |
56.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
257,873 |
A→G |
K15K (AAA→AAG) |
crl → |
DNA‑binding transcriptional regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 257,873 | 0 | A | G | 100.0%
| 172.6
/ NA
| 61 | K15K (AAA→AAG) | crl | DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (61/0); total (61/0) |
Only 100 of 109 total aligned reads displayed.
AATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTT > W3110S.gb/257828‑257931
|
aaTGACGTTACCGAGTGGCCACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTa > 1:890589/1‑58 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTa > 1:561279/1‑58 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:445025/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:611781/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:608153/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:605481/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:580367/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:569/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:568196/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:53524/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:505259/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:613897/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:403123/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:364594/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:36145/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:345346/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:307438/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:268212/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:243665/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:80784/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:937120/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:912854/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:911589/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:899881/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:895941/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:868947/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:843002/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:841750/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:387699/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:804619/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:792554/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:784300/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:781823/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:758685/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:639726/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:639291/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:1233480/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:1354953/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:1335935/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:1316175/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:1287014/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:1256142/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:1445931/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:1235183/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:1457629/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:1206130/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:1460779/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:1202067/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:1201893/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:1470656/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:1168826/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:1107644/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:1029398/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:1022499/1‑60 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAg > 1:648109/1‑59 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAg > 1:1125360/1‑59 (MQ=255)
aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTATACCGCACTAgg > 1:271930/1‑60 (MQ=255)
aTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAgg > 1:1429945/1‑59 (MQ=255)
aaagTTTACCGCACTAGGTCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:1308944/1‑62 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAgg > 1:1016706/1‑36 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTg > 1:1181014/1‑42 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:883482/1‑62 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:1458235/1‑62 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:327523/1‑62 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:313471/1‑62 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:1188863/1‑62 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:839144/1‑62 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:303646/1‑62 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:1130876/1‑62 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:274393/1‑62 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:362650/1‑62 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:1113684/1‑62 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:179831/1‑62 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:1055852/1‑62 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:907760/1‑62 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:2525/1‑62 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:181282/1‑62 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:925796/1‑62 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:222218/1‑62 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:1280538/1‑62 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:140289/1‑62 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:1418704/1‑62 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:1353515/1‑62 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:504808/1‑62 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:57040/1‑62 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:483680/1‑62 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:603638/1‑62 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:48112/1‑62 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:433663/1‑62 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:742379/1‑62 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:416419/1‑62 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:619140/1‑62 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:1251905/1‑62 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:395234/1‑62 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:1016567/1‑62 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:660117/1‑62 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:712059/1‑62 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:734923/1‑62 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCttt > 1:925734/1‑61 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCttt > 1:528150/1‑61 (MQ=255)
|
AATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTT > W3110S.gb/257828‑257931
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
