Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R2
|
164 |
48.3 |
4710601 |
85.3% |
4018142 |
55.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
257,873 |
A→G |
K15K (AAA→AAG) |
crl → |
DNA‑binding transcriptional regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 257,873 | 0 | A | G | 100.0%
| 181.3
/ NA
| 49 | K15K (AAA→AAG) | crl | DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (45/4); total (45/4) |
GGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTT > W3110S.gb/257819‑257931
|
ggAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCg > 1:3961988/1‑62 (MQ=255)
ggAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCg > 1:2724588/1‑62 (MQ=255)
ggAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCg > 1:1607794/1‑62 (MQ=255)
ggAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCg > 1:788550/1‑62 (MQ=255)
ggAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCg > 1:4667302/1‑62 (MQ=255)
ggAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCg > 1:591302/1‑62 (MQ=255)
gagaTAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTAcc > 1:2169535/1‑60 (MQ=255)
gagaTAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGc > 1:1195379/1‑62 (MQ=255)
gagaTAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGc > 1:3205400/1‑62 (MQ=255)
gagaTAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGc > 1:4543301/1‑62 (MQ=255)
gagaTAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGc > 1:2368201/1‑62 (MQ=255)
gagaTAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGc > 1:725104/1‑62 (MQ=255)
aCGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGtt > 1:2361398/1‑44 (MQ=255)
aCGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGtt > 1:1402248/1‑44 (MQ=255)
aCGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGtt > 1:666314/1‑44 (MQ=255)
aCGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGtt > 1:3065258/1‑44 (MQ=255)
aCGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGtt > 1:2385861/1‑44 (MQ=255)
aCGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGtt > 1:3843801/1‑44 (MQ=255)
aCGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGtt > 1:1880651/1‑44 (MQ=255)
aCGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGtt > 1:2159217/1‑44 (MQ=255)
aCGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGtt > 1:2136309/1‑44 (MQ=255)
aCGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGtt > 1:4671641/1‑44 (MQ=255)
aCGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAGGCCCGta > 1:3081944/1‑62 (MQ=255)
aCGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAGGCCCGta > 1:2568538/1‑62 (MQ=255)
aCGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAGGCCCGta > 1:3032298/1‑62 (MQ=255)
aCGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAGGCCCGta > 1:3020400/1‑62 (MQ=255)
aCGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAGGCCCGta > 1:3871489/1‑62 (MQ=255)
aCGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAGGCCCGta > 1:3304796/1‑62 (MQ=255)
aCGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAGGCCCGta > 1:720993/1‑62 (MQ=255)
aCGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAGGCCCGta > 1:2242762/1‑62 (MQ=255)
aCGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAGGCCCGta > 1:1994556/1‑62 (MQ=255)
aCGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAGGCCCGt > 1:2919901/1‑61 (MQ=255)
aCGTTACCGAGTGGACACACGAAGAGCAGATTGATCAAAAAGtt > 1:3249084/1‑44 (MQ=38)
gAGTTGACACCCGAAGAGCAGATTGATCAAAAAGTTTACCGCACTAGGCCCGTATATTCGt < 1:824204/61‑1 (MQ=255)
gAAGAGCAGATTGATCAAAAAGTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTg > 1:836301/1‑60 (MQ=255)
gAAGAGCAGATTGATCAAAAAGTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTg > 1:4410161/1‑60 (MQ=255)
gAAGAGCAGATTGATCAAAAAGTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTg > 1:927735/1‑60 (MQ=255)
gAAGAGCAGATTGATCAAAAAGTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTg > 1:1482813/1‑60 (MQ=255)
gAAGAGCAGATTGATCAAAAAGTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTg > 1:2532143/1‑60 (MQ=255)
agCAGATTGATCAAAAAGTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCaaa > 1:1423593/1‑60 (MQ=255)
agCAGATTGATCAAAAAGTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAg > 1:358502/1‑61 (MQ=255)
agCAGATTGATCAAAAAGTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAg > 1:363852/1‑61 (MQ=255)
agCAGATTGATCAAAAAGTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAg > 1:3775000/1‑61 (MQ=255)
agCAGATTGATCAAAAAGTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAg > 1:4683543/1‑61 (MQ=255)
aTCAAAAAGTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGAtt > 1:3382312/1‑62 (MQ=255)
aTCAAAAAGTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGAtt > 1:1662126/1‑62 (MQ=255)
tCAAAAAGTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGAtt < 1:139820/61‑1 (MQ=255)
tCAAAAAGTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGAtt < 1:624666/61‑1 (MQ=255)
tCAAAAAGTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGAtt < 1:1985202/61‑1 (MQ=255)
aaaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCttt > 1:3971333/1‑62 (MQ=255)
aaaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCttt > 1:3337468/1‑62 (MQ=255)
aaaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCttt > 1:3065854/1‑62 (MQ=255)
aaaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCttt > 1:3003444/1‑62 (MQ=255)
aaaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCttt > 1:1762446/1‑62 (MQ=255)
aaaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCttt > 1:1969089/1‑62 (MQ=255)
aaaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCttt > 1:4397397/1‑62 (MQ=255)
aaaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCttt > 1:2252161/1‑62 (MQ=255)
aaaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCttt > 1:4571480/1‑62 (MQ=255)
aaaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCttt > 1:4260353/1‑62 (MQ=255)
aaaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtt > 1:1866754/1‑61 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAg > 1:855339/1‑40 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:4020847/1‑62 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:4120379/1‑62 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:2927075/1‑62 (MQ=255)
aaagTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:2485626/1‑62 (MQ=255)
aaagTTTAACGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCtttt > 1:2019632/1‑62 (MQ=255)
|
GGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTT > W3110S.gb/257819‑257931
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
