Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I2 R1
|
721 |
0.0 |
1472758 |
54.8% |
807071 |
56.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
3,253,845 |
G→A |
E49E (GAG→GAA) |
yhaL → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 3,253,845 | 0 | G | A | 100.0%
| 215.1
/ NA
| 77 | E49E (GAG→GAA) | yhaL | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (77/0); total (77/0) |
GTTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACC > W3110S.gb/3253794‑3253857
|
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATg > 1:1336500/1‑56 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGc > 1:316677/1‑60 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCt > 1:1002747/1‑61 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCt > 1:356343/1‑61 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCt > 1:243572/1‑61 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCt > 1:590084/1‑61 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCt > 1:157848/1‑61 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCt > 1:1438955/1‑61 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCt > 1:1390088/1‑61 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCt > 1:1372649/1‑61 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCt > 1:78523/1‑61 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCt > 1:1324829/1‑61 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCt > 1:877786/1‑61 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCt > 1:1234645/1‑61 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCt > 1:912000/1‑61 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCt > 1:1152647/1‑61 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCt > 1:1116359/1‑61 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:980237/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:590469/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:969028/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:971034/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:558857/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:555252/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:524588/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:637739/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:482987/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:411677/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:377139/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:1001760/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:375859/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:983257/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:63451/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:958283/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:638271/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:67848/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:696551/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:724137/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:759242/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:948067/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:78199/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:897758/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:819720/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:837630/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:857837/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:138047/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:1026892/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:1048821/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:1051881/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:1064620/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:1108018/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:1149674/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:1176785/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:1194619/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:1260311/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:1285011/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:1296918/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:1323206/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:1355652/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:1366527/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:362990/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:211199/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:352891/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:259197/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:256255/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:245366/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:241549/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:222415/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:212733/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:1389478/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:1467003/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:1460008/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:1422240/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:1414208/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:1412554/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGCGGACGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:140835/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGTCGAGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTa > 1:84070/1‑62 (MQ=255)
gTTGAGCGAGCTGGAAGCCATCGT‑‑CGGATGCTGAAACGCGTTTAGCCGAAGATGAAGCTAcc > 1:940481/1‑62 (MQ=255)
|
GTTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACC > W3110S.gb/3253794‑3253857
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
