Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I2 R1
|
721 |
0.0 |
1472758 |
54.8% |
807071 |
56.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
4,416,028 |
A→T |
P15P (CCA→CCT) |
yjfK → |
conserved hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 4,416,028 | 0 | A | T | 100.0%
| 129.8
/ NA
| 51 | P15P (CCA→CCT) | yjfK | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (51/0); total (51/0) |
CAAGGATAATAAGCCAGCTATCGCTCGTGGTCCGCTGGG > W3110S.gb/4416013‑4416051
|
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:785145/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:466940/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:505275/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:507463/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:542781/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:546804/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:557992/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:606307/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:689976/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:70394/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:706826/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:729041/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:730705/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:457650/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:795645/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:80605/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:811992/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:818807/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:819939/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:836992/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:837826/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:842635/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:848323/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:901507/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:980864/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:1348469/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:1057432/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:1123524/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:1124710/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:114784/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:1165481/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:1173462/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:120399/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:1207125/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:1223085/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:1316327/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:1340425/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:1048925/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:137456/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:1381682/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:1423969/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:159316/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:192475/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:285890/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:356007/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:363676/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:364551/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:385514/1‑39 (MQ=25)
cAAGGATAATAAGCCTGCTATCGCTCGCGGTCCGTTggg > 1:436035/1‑39 (MQ=25)
cAAGGATAATAAGACTGCTATCGCTCGCGGTCCGTTggg > 1:277598/1‑39 (MQ=25)
cAAGGAGAATAAGCCTGCTATCGCTCGCGGTCCGTTg > 1:803413/1‑37 (MQ=21)
|
CAAGGATAATAAGCCAGCTATCGCTCGTGGTCCGCTGGG > W3110S.gb/4416013‑4416051
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
