Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R1
|
826 |
0.0 |
88706 |
74.7% |
66263 |
57.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
729,608 |
A→G |
Y18C (TAT→TGT) |
ybfA → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 729,608 | 0 | A | G | 100.0%
| 109.8
/ NA
| 57 | Y18C (TAT→TGT) | ybfA | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (0/57); total (0/57) |
AAGTATGGAACTCTACAGAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTATGCG > W3110S.gb/729552‑729612
|
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:68778/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:10612/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:52279/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:56752/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:57021/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:57356/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:58728/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:59140/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:64685/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:66083/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:6648/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:66687/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:67290/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:67383/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:51665/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:69495/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:70363/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:73134/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:73676/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:75598/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:77659/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:78276/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:79145/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:81492/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:82311/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:84478/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:8766/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:9882/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:23506/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:11384/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:11840/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:13178/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:14271/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:151/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:17027/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:17161/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:17815/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:18685/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:19405/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:20624/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:20976/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:2290/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:48472/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:24494/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:26243/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:27813/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:28571/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:28620/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:34572/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:34859/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:35985/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:40275/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:41001/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:46758/61‑1 (MQ=255)
aaGTATGGAACTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:47611/61‑1 (MQ=255)
aCTCTACAAAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:68960/52‑1 (MQ=255)
ccTGGATGGCTTATCTTTTTACGCCGTACTTGTGCg < 1:67429/36‑1 (MQ=37)
|
AAGTATGGAACTCTACAGAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACTTATGCG > W3110S.gb/729552‑729612
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
