Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R1
|
826 |
0.0 |
88706 |
74.7% |
66263 |
57.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
739,680 |
C→T |
P86P (CCC→CCT) |
ybgA → |
conserved hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 739,680 | 0 | C | T | 100.0%
| 41.7
/ NA
| 25 | P86P (CCC→CCT) | ybgA | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (25/0); total (25/0) |
GTTTTGCTTTCTCACCCCGCCAACCCGCGCGATCACACCAATGTTTTGATGCACGTTCAGGGTTATTTTCGCCCGCATA > W3110S.gb/739663‑739741
|
gttTTGCTTTCTCACCCTGCCAAGCGGCGTGATCATACTAACGTTTTGATGCACGCTCAgg > 1:10003/1‑61 (MQ=19)
gttTTGCTTTCTCACCCTGCCAACCGGCGTGATCATACTAACGTTTTGATGCACGCTCAgg > 1:87877/1‑61 (MQ=255)
gttTTGCTTTCTCACCCTGCCAACCGGCGTGATCATACTAACGTTTTGATGCACGCTCAgg > 1:66968/1‑61 (MQ=255)
gttTTGCTTTCTCACCCTGCCAACCGGCGTGATCATACTAACGTTTTGATGCACGCTCAgg > 1:62210/1‑61 (MQ=255)
gttTTGCTTTCTCACCCTGCCAACCGGCGTGATCATACTAACGTTTTGATGCACGCTCAgg > 1:61633/1‑61 (MQ=255)
gttTTGCTTTCTCACCCTGCCAACCGGCGTGATCATACTAACGTTTTGATGCACGCTCAgg > 1:57392/1‑61 (MQ=255)
gttTTGCTTTCTCACCCTGCCAACCGGCGTGATCATACTAACGTTTTGATGCACGCTCAgg > 1:73330/1‑61 (MQ=255)
gttTTGCTTTCTCACCCTGCCAACCGGCGTGATCATACTAACGTTTTGATGCACGCTCAgg > 1:44953/1‑61 (MQ=255)
gttTTGCTTTCTCACCCTGCCAACCGGCGTGATCATACTAACGTTTTGATGCACGCTCAgg > 1:44076/1‑61 (MQ=255)
gttTTGCTTTCTCACCCTGCCAACCGGCGTGATCATACTAACGTTTTGATGCACGCTCAgg > 1:42433/1‑61 (MQ=255)
gttTTGCTTTCTCACCCTGCCAACCGGCGTGATCATACTAACGTTTTGATGCACGCTCAgg > 1:41939/1‑61 (MQ=255)
gttTTGCTTTCTCACCCTGCCAACCGGCGTGATCATACTAACGTTTTGATGCACGCTCAgg > 1:7562/1‑61 (MQ=255)
gttTTGCTTTCTCACCCTGCCAACCGGCGTGATCATACTAACGTTTTGATGCACGCTCAgg > 1:38747/1‑61 (MQ=255)
gttTTGCTTTCTCACCCTGCCAACCGGCGTGATCATACTAACGTTTTGATGCACGCTCAgg > 1:38007/1‑61 (MQ=255)
gttTTGCTTTCTCACCCTGCCAACCGGCGTGATCATACTAACGTTTTGATGCACGCTCAgg > 1:36259/1‑61 (MQ=255)
gttTTGCTTTCTCACCCTGCCAACCGGCGTGATCATACTAACGTTTTGATGCACGCTCAgg > 1:12964/1‑61 (MQ=255)
gttTTGCTTTCTCACCCTGCCAACCGGCGTGATCATACTAACGTTTTGATGCACGCTCAgg > 1:16165/1‑61 (MQ=255)
gttTTGCTTTCTCACCCTGCCAACCGGCGTGATCATACTAACGTTTTGATGCACGCTCAgg > 1:23101/1‑61 (MQ=255)
gttTTGCTTTCTCACCCTGCCAACCGGCGTGATCATACTAACGTTTTGATGCACGCTCAgg > 1:78056/1‑61 (MQ=255)
gttTTGCTTTCTCACCCTGCCAACCGGCGTGATCATACTAACGTTTTGATGCACGCTCAgg > 1:37739/1‑61 (MQ=255)
gttTTGCTTTCTCACCCTGCCAACCGGCGTGATCATACTAACGTTTTGATGCACGCTCAgc > 1:81849/1‑60 (MQ=255)
gttTTGCTTTCTCACCCTGCCAACCGGCGTGATCATACTAACGTTTTGATGCACGCTCAg > 1:61305/1‑60 (MQ=255)
gttTTGCTTTCTCACCCTGCCAACCGGCGTGATCATACTAACGTTTTGATGAACGCTCAgg > 1:35208/1‑61 (MQ=255)
gttTTGCTTTCTCACCCTGCCAACCGGCGTGATCAAACAAACGTTTTGATGCACGCTCAgg > 1:18319/1‑61 (MQ=255)
gttTTGCTTTCTCACCCTGCCAACCGGCG‑TATCATACTAACGTTTTGATGCACGCTCAggga > 1:36065/1‑61 (MQ=255)
cGCCAACCCGCGCGATCACACCAATGTTTTGATGCACGTTCAGGGTTATTTTCGCCCGCata < 1:77362/62‑1 (MQ=255)
cGCCAACCCGCGCGATCACACCAATGTTTTGATGCACGTTCAGGGTTATTTTCGCCCGCata < 1:74479/62‑1 (MQ=255)
cGCCAACCCGCGCGATCACACCAATGTTTTGATGCACGTTCAGGGTTATTTTCGCCCGCata < 1:82890/62‑1 (MQ=255)
cGCCAACCCGCGCGATCACACCAATGTTTTGATGCACGTTCAGGGTTATTTTCGCCCGCata < 1:87321/62‑1 (MQ=255)
cGCCAACCCGCGCGATCACACCAATGTTTTGATGCACGTTCAGGGTTATTTTCGCCCGCata < 1:7255/62‑1 (MQ=255)
cGCCAACCCGCGCGATCACACCAATGTTTTGATGCACGTTCAGGGTTATTTTCGCCCGCata < 1:70123/62‑1 (MQ=255)
cGCCAACCCGCGCGATCACACCAATGTTTTGATGCACGTTCAGGGTTATTTTCGCCCGCata < 1:48334/62‑1 (MQ=255)
cGCCAACCCGCGCGATCACACCAATGTTTTGATGCACGTTCAGGGTTATTTTCGCCCGCata < 1:69945/62‑1 (MQ=255)
cGCCAACCCGCGCGATCACACCAATGTTTTGATGCACGTTCAGGGTTATTTTCGCCCGCata < 1:69739/62‑1 (MQ=255)
cGCCAACCCGCGCGATCACACCAATGTTTTGATGCACGTTCAGGGTTATTTTCGCCCGCata < 1:69474/62‑1 (MQ=255)
cGCCAACCCGCGCGATCACACCAATGTTTTGATGCACGTTCAGGGTTATTTTCGCCCGCata < 1:68709/62‑1 (MQ=255)
cGCCAACCCGCGCGATCACACCAATGTTTTGATGCACGTTCAGGGTTATTTTCGCCCGCata < 1:6545/62‑1 (MQ=255)
cGCCAACCCGCGCGATCACACCAATGTTTTGATGCACGTTCAGGGTTATTTTCGCCCGCata < 1:6469/62‑1 (MQ=255)
cGCCAACCCGCGCGATCACACCAATGTTTTGATGCACGTTCAGGGTTATTTTCGCCCGCata < 1:53535/62‑1 (MQ=255)
cGCCAACCCGCGCGATCACACCAATGTTTTGATGCACGTTCAGGGTTATTTTCGCCCGCata < 1:40875/62‑1 (MQ=255)
cGCCAACCCGCGCGATCACACCAATGTTTTGATGCACGTTCAGGGTTATTTTCGCCCGCata < 1:40164/62‑1 (MQ=255)
cGCCAACCCGCGCGATCACACCAATGTTTTGATGCACGTTCAGGGTTATTTTCGCCCGCata < 1:27149/62‑1 (MQ=255)
cGCCAACCCGCGCGATCACACCAATGTTTTGATGCACGTTCAGGGTTATTTTCGCCCGCata < 1:26489/62‑1 (MQ=255)
cGCCAACCCGCGCGATCACACCAATGTTTTGATGCACGTTCAGGGTTATTTTCGCCCGCata < 1:22580/62‑1 (MQ=255)
cGCCAACCCGCGCGATCACACCAATGTTTTGATGCACGTTCAGGGTTATTTTCGCCCGCata < 1:13366/62‑1 (MQ=255)
cGCCAACCCGCGCGATCACACCAATGTTTTGATGCACGTTCAGGGTTATTTTCGCCCGCata < 1:11916/62‑1 (MQ=255)
cGCCAACCCGCGCGATCACACCAATGTTTTGATGCACGTTCAGGGTTATTTTCGCCCGCata < 1:10661/62‑1 (MQ=255)
|
GTTTTGCTTTCTCACCCCGCCAACCCGCGCGATCACACCAATGTTTTGATGCACGTTCAGGGTTATTTTCGCCCGCATA > W3110S.gb/739663‑739741
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
