Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R1
|
826 |
0.0 |
88706 |
74.7% |
66263 |
57.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
2,788,832 |
T→C |
F65F (TTT→TTC) |
ygaF → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 2,788,832 | 0 | T | C | 100.0%
| 103.3
/ NA
| 56 | F65F (TTT→TTC) | ygaF | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (0/56); total (0/56) |
CAGCCTGAAGGCGCAGTTTTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAC > W3110S.gb/2788814‑2788877
|
cAGCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGC‑‑CCAAAGCCTTTTGCGATCAAAAc < 1:75063/62‑1 (MQ=255)
gCCTGAAGGTGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:82221/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCTATCAAAAc < 1:20599/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCTATCAAAAc < 1:79377/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:77143/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:10045/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:55625/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:59843/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:62642/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:62909/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:63068/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:65905/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:67601/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:68252/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:68577/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:69832/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:73893/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:54410/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:776/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:80415/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:80458/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:8134/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:81771/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:82270/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:83181/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:84019/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:86104/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:86225/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:52460/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:10442/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:1349/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:17016/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:19955/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:2002/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:21728/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:24995/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:26338/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:27223/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:2950/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:32985/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:33218/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:33486/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:33855/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:34098/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:36666/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:38108/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:39890/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:40618/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:4438/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:44413/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:4657/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:46616/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:48541/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:54/62‑1 (MQ=255)
gCCTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACAAAAGCCTTTTGCGATCAAAAc < 1:76522/62‑1 (MQ=255)
ccTGAAGGCGCAGTTCTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAc < 1:58000/61‑1 (MQ=255)
|
CAGCCTGAAGGCGCAGTTTTGCCTGGCGGGAAACCGCGCCACCAAAGCCTTTTGCGATCAAAAC > W3110S.gb/2788814‑2788877
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
