Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R1
|
826 |
0.0 |
88706 |
74.7% |
66263 |
57.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
3,938,807 |
C→T |
A350T (GCT→ACT) |
yhjV ← |
predicted transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 3,938,807 | 0 | C | T | 100.0%
| 195.7
/ NA
| 107 | A350T (GCT→ACT) | yhjV | predicted transporter |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (0/107); total (0/107) |
Only 100 of 107 total aligned reads displayed.
ACACCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGCGCAG > W3110S.gb/3938750‑3938811
|
acacTAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:65523/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAATGTAATGACGATAAAAGTGCAg < 1:60996/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:5637/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:65346/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:63906/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:61988/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:60707/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:60264/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:59089/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:58483/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:57742/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:57658/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:57620/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:66001/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:55909/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:55683/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:53330/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:49714/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:49253/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:48788/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:48546/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:46021/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:45646/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:1070/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:45045/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:77217/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:88472/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:8826/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:85232/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:84691/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:8445/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:83784/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:83253/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:80805/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:80587/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:80113/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:77384/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:45291/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:77168/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:76804/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:73963/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:73544/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:72809/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:71877/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:68662/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:66856/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:66582/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:66222/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:66129/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:21672/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:30582/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:29398/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:27146/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:26408/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:2607/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:24304/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:2416/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:23338/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:22628/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:22215/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:22121/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:44878/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:1943/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:19205/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:16798/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:16284/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:15103/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:14363/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:12958/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:12540/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:12476/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:12182/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:11149/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:36532/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:44946/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:44686/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:44539/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:43262/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:41179/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:40229/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:38648/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:37980/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:37146/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:3686/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:36579/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:31522/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:35593/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:3374/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:33533/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:33361/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:3246/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:31731/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:31639/62‑1 (MQ=255)
acacCAGCACCGATACACGAAACGAAACCAAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:67802/62‑1 (MQ=255)
cacCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:32032/61‑1 (MQ=255)
cAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:55996/58‑1 (MQ=255)
cGATACACTAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:29813/52‑1 (MQ=255)
gATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:44634/51‑1 (MQ=255)
tACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:66761/49‑1 (MQ=255)
cgaaacgaaaCCCAAATCGTCAACGTAATGACGATAAAAGTGCAg < 1:28039/45‑1 (MQ=255)
|
ACACCAGCACCGATACACGAAACGAAACCCAAATCGTCAACGTAATGACGATAAAAGCGCAG > W3110S.gb/3938750‑3938811
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
