Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R1
|
375 |
42.1 |
2927644 |
71.4% |
2090337 |
57.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
919,423 |
A→T |
R40R (CGT→CGA) |
ybjX ← |
conserved hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 919,423 | 0 | A | T | 100.0%
| 166.0
/ NA
| 50 | R40R (CGT→CGA) | ybjX | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (50/0); total (50/0) |
GCAGCAAAAATTTCTGGCGAAAACTACGGCGATGCCAGAATTTACCCGGCCGACACTGTCCACGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGAT > W3110S.gb/919362‑919468
|
gcatcaAAAATTTCTGGCGAAAACTACGGCGATGCCAGAATTTACCCGGCCGACACTGTCCa > 1:218190/1‑62 (MQ=255)
gcagcaAAAATTTCTGGCGAAAACTACGGCGATGCCAGAATTTACCCGGCCGACACTGTCCa > 1:1193885/1‑62 (MQ=255)
gcagcaAAAATTTCTGGCGAAAACTACGGCGATGCCAGAATTTACCCGGCCGACACTGTCCa > 1:2050920/1‑62 (MQ=255)
gcagcaAAAATTTCTGGCGAAAACTACGGCGATGCCAGAATTTACCCGGCCGACACTGTCCa > 1:2187839/1‑62 (MQ=255)
gcagcaAAAATTTCTGGCGAAAACTACGGCGATGCCAGAATTTACCCGGCCGACACTGTCCa > 1:1983378/1‑62 (MQ=255)
gcagcaAAAATTTCTGGCGAAAACTACGGCGATGCCAGAATTTACCCGGCCGACACTGTCCa > 1:1917934/1‑62 (MQ=255)
gcagcaAAAATTTCTGGCGAAAACTACGGCGATGCCAGAATTTACCCGGCCGACACTGTCCa > 1:1834251/1‑62 (MQ=255)
gcagcaAAAATTTCTGGCGAAAACTACGGCGATGCCAGAATTTACCCGGCCGACACTGTCCa > 1:1666205/1‑62 (MQ=255)
gcagcaAAAATTTCTGGCGAAAACTACGGCGATGCCAGAATTTACCCGGCCGACACTGTCCa > 1:2711593/1‑62 (MQ=255)
gcagcaAAAATTTCTGGCGAAAACTACGGCGATGCCAGAATTTACCCGGCCGACACTGTCCa > 1:2841280/1‑62 (MQ=255)
gcagcaAAAATTTCTGGCGAAAACTACGGCGATGCCAGAATTTACCCGGCCGACACTGTCCa > 1:154154/1‑62 (MQ=255)
gcagcaAAAATTTCTGGCGAAAACTACGGCGATGCCAGAATTTACCCGGCCGACACTGTCCa > 1:343742/1‑62 (MQ=255)
gcagcaAAAATTTCTGGCGAAAACTACGGCGATGCCAGAATTTACCCGGCCGACACTGTCCa > 1:630990/1‑62 (MQ=255)
gcagcaAAAATTTCTGGCGAAAACTACGGCGATGCCAGAATTTACCCGGCCGACACTGTCCa > 1:454321/1‑62 (MQ=255)
gcagcaAAAATTTCTGGCGAAAACTACGGCGATGCCAGAATTTACCCGGCCGACACTGTCCa > 1:453352/1‑62 (MQ=255)
gcagcaAAAATTTCTGGCGAAAACTACGGCGATGCCAGAATTTACCCGGCCGACACTGTCCa > 1:1356980/1‑62 (MQ=255)
gcagcaAAAATTTCTGGCGAAAACTACGGCGATGCCAGAATTTACACGGCCGACACTGTCCa > 1:2465636/1‑62 (MQ=255)
ccGGCCGACATTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGAt > 1:2052069/1‑62 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGTCAGgctg > 1:2845691/1‑47 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGAc > 1:1972638/1‑41 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAgg > 1:2601205/1‑44 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAgg > 1:465991/1‑44 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTga > 1:2380024/1‑51 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAg > 1:2761533/1‑60 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGa > 1:2436498/1‑61 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGa > 1:382195/1‑61 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGa > 1:2418959/1‑61 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGa > 1:345358/1‑61 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGa > 1:2392841/1‑61 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGa > 1:225471/1‑61 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGa > 1:955954/1‑61 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGa > 1:2078987/1‑61 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGa > 1:1581767/1‑61 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGa > 1:144083/1‑61 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGa > 1:1599180/1‑61 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGa > 1:1655339/1‑61 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGa > 1:1944849/1‑61 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGa > 1:1930806/1‑61 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGAt > 1:1454771/1‑62 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGAt > 1:2712500/1‑62 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGAt > 1:1399985/1‑62 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGAt > 1:1354498/1‑62 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGAt > 1:396360/1‑62 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGAt > 1:1291508/1‑62 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGAt > 1:1252473/1‑62 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGAt > 1:1227860/1‑62 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGAt > 1:51661/1‑62 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGAt > 1:533205/1‑62 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGAt > 1:1221467/1‑62 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGAt > 1:883118/1‑62 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGAt > 1:89130/1‑62 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGAt > 1:121908/1‑62 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGAt > 1:1577793/1‑62 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGAt > 1:2801613/1‑62 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGAt > 1:2093257/1‑62 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGAt > 1:2693092/1‑62 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGAt > 1:2486029/1‑62 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGAt > 1:1777554/1‑62 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGAt > 1:1810146/1‑62 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGAt > 1:1892319/1‑62 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGAt > 1:2337494/1‑62 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGAt > 1:2279475/1‑62 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGAt > 1:1983757/1‑62 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGAt > 1:22374/1‑62 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGAt > 1:2036969/1‑62 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGAt > 1:2183575/1‑62 (MQ=255)
ccGGCCGACACTGTCCTCGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGAt > 1:214469/1‑62 (MQ=255)
|
GCAGCAAAAATTTCTGGCGAAAACTACGGCGATGCCAGAATTTACCCGGCCGACACTGTCCACGTGCCAGACTAAGAAAAAGTGACAGGCTGCTGAGAGATTCAGAT > W3110S.gb/919362‑919468
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
