Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R1
|
375 |
42.1 |
2927644 |
71.4% |
2090337 |
57.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
3,770,855 |
C→T |
G62G (GGG→GGA) |
cbrA ← |
predicted oxidoreductase, FAD/NAD(P)‑binding domain |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 3,770,855 | 0 | C | T | 100.0%
| 161.4
/ NA
| 50 | G62G (GGG→GGA) | cbrA | predicted oxidoreductase, FAD/NAD(P)‑binding domain |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (0/50); total (0/50) |
GTCGACGGTTTTGACGCTGAAAATCTGCGGATTAGCGATCACATCGACAGGAAGCGTCAGCCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCCGCAGGGTTTGC > W3110S.gb/3770795‑3770913
|
gTCGACGGTTTTGACGCTGAAAATCTGCGGATTAGCGATCACATCGACAGGAAGCGTCAGcc < 1:1053244/62‑1 (MQ=255)
gTCGACGGTTTTGACGCTGAAAATCTGCGGATTAGCGATCACATCGACAGGAAGCGTCAGcc < 1:2457247/62‑1 (MQ=255)
gTCGACGGTTTTGACGCTGAAAATCTGCGGATTAGCGATCACATCGACAGGAAGCGTCAGcc < 1:2791736/62‑1 (MQ=255)
gTCGACGGTTTTGACGCTGAAAATCTGCGGATTAGCGATCACATCGACAGGAAGCGTCAGcc < 1:2810297/62‑1 (MQ=255)
gTCGACGGTTTTGACGCTGAAAATCTGCGGATTAGCGATCACATCGACAGGAAGCGTCAGcc < 1:2816093/62‑1 (MQ=255)
gTCGACGGTTTTGACGCTGAAAATCTGCGGATTAGCGATCACATCGACAGGAAGCGTCAGcc < 1:2068309/62‑1 (MQ=255)
gTCGACGGTTTTGACGCTGAAAATCTGCGGATTAGCGATCACATCGACAGGAAGCGTCAGcc < 1:364479/62‑1 (MQ=255)
gTCGACGGTTTTGACGCTGAAAATCTGCGGATTAGCGATCACATCGACAGGAAGCGTCAGcc < 1:194829/62‑1 (MQ=255)
gTCGACGGTTTTGACGCTGAAAATCTGCGGATTAGCGATCACATCGACAGGAAGCGTCAGcc < 1:1911966/62‑1 (MQ=255)
gTCGACGGTTTTGACGCTGAAAATCTGCGGATTAGCGATCACATCGACAGGAAGCGTCAGcc < 1:1868441/62‑1 (MQ=255)
gTCGACGGTTTTGACGCTGAAAATCTGCGGATTAGCGATCACATCGACAGGAAGCGTCAGcc < 1:401264/62‑1 (MQ=255)
gTCGACGGTTTTGACGCTGAAAATCTGCGGATTAGCGATCACATCGACAGGAAGCGTCAGcc < 1:514981/62‑1 (MQ=255)
gTCGACGGTTTTGACGCTGAAAATCTGCGGATTAGCGATCACATCGACAGGAAGCGTCAGcc < 1:176412/62‑1 (MQ=255)
gTCGACGGTTTTGACGCTGAAAATCTGCGGATTAGCGATCACATCGACAGGAAGCGTCAGcc < 1:541104/62‑1 (MQ=255)
gTCGACGGTTTTGACGCTGAAAATCTGCGGATTAGCGATCACATCGACAGGAAGCGTCAGcc < 1:1503829/62‑1 (MQ=255)
gTCGACGGTTTTGACGCTGAAAATCTGCGGATTAGCGATCACATCGACAGGAAGCGTCAGcc < 1:848520/62‑1 (MQ=255)
gTCGACGGTTTTGACGCTGAAAATCTGCGGATTAGCGATCACATCGACAGGAAGCGTCAGcc < 1:629622/62‑1 (MQ=255)
gTCGACGGTTTTGACGCTGAAAATCTGCGGATTAGCGATCACATCGACAGGAAGCGTCAGcc < 1:1304439/62‑1 (MQ=255)
gTCGACGGTTTTGACGCTGAAAATCTGCGGATTAGCGATCACATCGACAGGAAGCGTCAGcc < 1:768110/62‑1 (MQ=255)
gTCGACGGTTTTGACGCTGAAAATCTGCGGATTAGCGATCACATCGACAGGAAGCGTCAGcc < 1:1212365/62‑1 (MQ=255)
tCGACGGTTTTGACGCTGAAAATCTGCGGATTAGCGATCACATCGACAGGAAGCGTCAGcc < 1:763067/61‑1 (MQ=255)
ggTTTTGACGCTGAAAATCTGCGGATTAGCGATCACATCGACAGGAAGCGTCAGcc < 1:2674377/56‑1 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:604651/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:595967/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:2697043/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:864473/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:2697977/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:2705590/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:2706001/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:2763013/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:2763108/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:1001091/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:386055/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:645852/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:2824948/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:2841289/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:2914888/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:2948/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:397532/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:309442/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:647247/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:667343/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:1944957/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:1059996/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:1185540/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:11856/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:1186056/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:1231572/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:124030/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:1256034/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:1349161/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:1424094/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:1759942/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:1794815/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:1861894/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:1886165/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:2514438/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:2202346/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:2470350/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:2453413/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:2364694/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:2362445/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:2259457/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:2243383/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:197734/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:2136620/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:2103217/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:2085035/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:2072575/62‑3 (MQ=255)
aaGCGTCAGTCCATCGCGAATAAAAGATCCCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:2283192/62‑3 (MQ=255)
aGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:2374849/61‑3 (MQ=255)
aGCGTCAGTCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCcacaag < 1:376720/61‑3 (MQ=255)
cccATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCCGCAGGGTTTGc < 1:5998/59‑1 (MQ=255)
cccATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCCGCAGGGTTTGc < 1:1564319/59‑1 (MQ=255)
cccATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCCGCAGGGTTTGc < 1:661710/59‑1 (MQ=255)
cccATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCCGCAGGGTTTGc < 1:2024908/59‑1 (MQ=255)
|
GTCGACGGTTTTGACGCTGAAAATCTGCGGATTAGCGATCACATCGACAGGAAGCGTCAGCCCATCGCGAATAAAAGATCGCTGCGCGTCCGGTGCCAGCAGACCGCCGCAGGGTTTGC > W3110S.gb/3770795‑3770913
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
