Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F28 I2 R1
|
52 |
300.6 |
3297834 |
97.8% |
3225281 |
57.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
724,065 |
T→C |
T103T (ACT→ACC) |
yceQ → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 724,065 | 0 | T | C | 100.0%
| 216.4
/ NA
| 57 | T103T (ACT→ACC) | yceQ | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (2/55); total (2/55) |
CCTTGTTATAGCAAGATGACTTTTACCATTTATCACCCGCTTACTCACAGTTTTTTCACTTCTTGCTGGTGATTGGTTTAATAACCATCAATAAAGTGATCACGC > minE/724006‑724110
|
ccTTGTTATAGCAAGATGACTTTTACCATTTATCACCCGCTTACTCACAGTTTTTTCAcctc > 1:2643658/1‑62 (MQ=255)
ccTTGTTATAGCAAGATGACTTTTACCATTTATCACCCGCTTACTCACAGTTTTTTCAcctc > 1:3017122/1‑62 (MQ=255)
ccTTGTTATAGCAAGATGACTTTTACCATTTATCACCCGCTTACTCACAGTTTTTTCAcctc > 1:2022869/1‑62 (MQ=255)
ccTTGTTATAGCAAGATGACTTTTACCATTTATCACCCGCTTACTCACAGTTTTTTCAcctc > 1:2921975/1‑62 (MQ=255)
ccTTGTTATAGCAAGATGACTTTTACCATTTATCACCCGCTTACTCACAGTTTTTTCAcctc > 1:2394946/1‑62 (MQ=255)
ccTTGTTATAGCAAGATGACTTTTACCATTTATCACCCGCTTACTCACAGTTTTTTCAcctc > 1:2403156/1‑62 (MQ=255)
ccTTGTTATAGCAAGATGACTTTTACCATTTATCACCCGCTTACTCACAGTTTTTTCAcctc > 1:602436/1‑62 (MQ=255)
ccTTGTTATAGCAAGATGACTTTTACCATTTATCACCCGCTTACTCACAGTTTTTTCAcctc > 1:2474302/1‑62 (MQ=255)
ccTTGTTATAGCAAGATGACTTTTACCATTTATCACCCGCTTACTCACAGTTTTTTCAcctc > 1:2849948/1‑62 (MQ=255)
ccTTGTTATAGCAAGATGACTTTTACCATTTATCACCCGCTTACTCACAGTTTTTTCAcctc > 1:1401782/1‑62 (MQ=255)
ccTTGTTATAGCAAGATGACTTTTACCATTTATCACCCGCTTACTCACAGTTTTTTCAcctc > 1:1393274/1‑62 (MQ=255)
ccTTGTTATAGCAAGATGACTTTTACCATTTATCACCCGCTTACTCACAGTTTTTTCAcctc > 1:1367803/1‑62 (MQ=255)
ccTTGTTATAGCAAGATGACTTTTACCATTTATCACCCGCTTACTCACAGTTTTTTCAcctc > 1:807478/1‑62 (MQ=255)
ccTTGTTATAGCAAGATGACTTTTACCATTTATCACCCGCTTACTCACAGTTTTTTCAcctc > 1:1342713/1‑62 (MQ=255)
ccTTGTTATAGCAAGATGACTTTTACCATTTATCACCCGCTTACTCACAGTTTTTTCAcctc > 1:814146/1‑62 (MQ=255)
ccTTGTTATAGCAAGATGACTTTTACCATTTATCACCCGCTTACTCACAGTTTTTTCAcctc > 1:2761132/1‑62 (MQ=255)
ccTTGTTATAGCAAGATGACTTTTACCATTTATCACCCGCTTACTCACAGTTTTTTCAcctc > 1:1286359/1‑62 (MQ=255)
ccTTGTTATAGCAAGATGACTTTTACCATTTATCACCCGCATACTCACAGTTTTTTCAcctc > 1:3044327/1‑62 (MQ=255)
ttATCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCaa < 1:1736352/62‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:278017/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:2961368/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:2986147/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:30029/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:3004447/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:2737228/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:437617/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:3044464/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:3072946/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:3125683/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:3190832/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:1054271/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:445624/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:468761/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:518140/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:52028/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:52411/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:641328/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:701999/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:7071/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:838255/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:85861/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:912602/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:1019936/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:1333123/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:1353725/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:1434809/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:1454571/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:1497649/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:1517924/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:1519156/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:1547243/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:1584935/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:1637506/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:1704774/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:1897588/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:2580710/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:197234/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:2093692/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:252762/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:2110033/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:2113684/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:218785/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:2190197/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:2205962/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:2041140/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:235562/61‑1 (MQ=255)
tCACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:2214940/61‑1 (MQ=255)
cACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:2214468/60‑1 (MQ=255)
cACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:405376/60‑1 (MQ=255)
cACCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGATTAATAACCATCAATa < 1:1323994/60‑1 (MQ=255)
aCCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:2977733/59‑1 (MQ=255)
aCCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:2515956/59‑1 (MQ=255)
aCCCGCTTACTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATa < 1:1244812/59‑1 (MQ=255)
cTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATAAAGTGATCACGc > 1:3274501/1‑62 (MQ=255)
cTCACAGTTTTTTCACCTCTTGCTGGTGATTGGTTTAATAACCATCAATAAAGTGATCACGc > 1:2544130/1‑62 (MQ=255)
|
CCTTGTTATAGCAAGATGACTTTTACCATTTATCACCCGCTTACTCACAGTTTTTTCACTTCTTGCTGGTGATTGGTTTAATAACCATCAATAAAGTGATCACGC > minE/724006‑724110
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
