Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R2
|
164 |
48.3 |
4710601 |
85.3% |
4018142 |
55.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
464,946 |
A→G |
F531L (TTC→CTC) |
ybaE ← |
predicted transporter subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 464,946 | 0 | A | G | 100.0%
| 271.0
/ NA
| 72 | F531L (TTC→CTC) | ybaE | predicted transporter subunit |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (41/31); total (41/31) |
CACCGTTCACGCCGGGAGGGGCACTAATGCGATAGTGATAGTTGAACAGCGGCGTCAGCGTCGCATCTGTCATTAACTGGCTAAAAACCGCTTTCAGGGCATTA > W3110S.gb/464901‑465004
|
cacCGTTCACGCCGGGAGGGGCACTAATGCGATAGTGATAGTTGAGCAGCGGCGTCAGCGt > 1:2997298/1‑61 (MQ=255)
cacCGTTCACGCCGGGAGGGGCACTAATGCGATAGTGATAGTTGAGCAGCGGCGTCAGCGt > 1:4430356/1‑61 (MQ=255)
cacCGTTCACGCCGGGAGGGGCACTAATGCGATAGTGATAGTTGAGCAGCGGCGTCAGCGt > 1:2936695/1‑61 (MQ=255)
cacCGTTCACGCCGGGAGGGGCACTAATGCGATAGTGATAGTTGAGCAGCGGCGTCAGCGt > 1:4467177/1‑61 (MQ=255)
cacCGTTCACGCCGGGAGGGGCACTAATGCGATAGTGATAGTTGAGCAGCGGCGTCAGCGt > 1:20224/1‑61 (MQ=255)
cacCGTTCACGCCGGGAGGGGCACTAATGCGATAGTGATAGTTGAGCAGCGGCGTCAGCGt > 1:2820383/1‑61 (MQ=255)
cacCGTTCACGCCGGGAGGGGCACTAATGCGATAGTGATAGTTGAGCAGCGGCGTCAGCGt > 1:2708381/1‑61 (MQ=255)
cacCGTTCACGCCGGGAGGGGCACTAATGCGATAGTGATAGTTGAGCAGCGGCGTCAGCGt > 1:2722902/1‑61 (MQ=255)
acCGTTCACGCCGGGAGGGGCACTAATGCGATAGTGATAGTTGAGCAGCGGCGTCAGCGTCg < 1:1505529/62‑1 (MQ=255)
acCGTTCACGCCGGGAGGGGCACTAATGCGATAGTGATAGTTGAGCAGCGGCGTCAGCGTCg < 1:2376215/62‑1 (MQ=255)
acCGTTCACGCCGGGAGGGGCACTAATGCGATAGTGATAGTTGAGCAGCGGCGTCAGCGTCg < 1:3232997/62‑1 (MQ=255)
ccGTTCACGCCGGGAGGGGCACTAATGCGATAGTGATAGTTGAGCAGCGGCGTCAGCGTCg < 1:1245928/61‑1 (MQ=255)
ccGTTCACGCCGGGAGGGGCACTAATGCGATAGTGATAGTTGAGCAGCGGCGTCAGCGTCg < 1:2599478/61‑1 (MQ=255)
ccGTTCACGCCGGGAGGGGCACTAATGCGATAGTGATAGTTGAGCAGCGGCGTCAGCGTCg < 1:3812271/61‑1 (MQ=255)
ccGTTCACGCCGGGAGGGGCACTAATGCGATAGTGATAGTTGAGCAGCGGCGTCAGCGTCg < 1:4506865/61‑1 (MQ=255)
gTTCACGCCGGGAGGGGCACTAATGCGATAGTGATAGTTGAGCAGCGGCGTCAGCGTCGCAt > 1:1611217/1‑62 (MQ=255)
ttCACGCCGGGAGGGGCACTAATGCGATAGTGATAGTTGAGCAGCGGCGTCAGCGTCGCATc < 1:2137715/62‑1 (MQ=255)
ttCACGCCGGGAGGGGCACTAATGCGATAGTGATAGTTGAGCAGCGGCGTCAGCGTCGCATc < 1:3292983/62‑1 (MQ=255)
ttCACGCCGGGAGGGGCACTAATGCGATAGTGATAGTTGAGCAGCGGCGTCAGCGTCGCATc < 1:2120908/62‑1 (MQ=255)
ggAGGGGCACTAATGCGATAGTGATAGTTGAGCAGCGGCGTCAGCGTCGCATCTGTAATTaa > 1:1366136/1‑62 (MQ=255)
aTGCGATAGTGATAGTTGAGCAGCGGCGTCAGCGTCGCATc < 1:326070/41‑1 (MQ=255)
aTGCGATAGTGATAGTTGAGCAGCGGCGTCAGCGTCGCATc < 1:3214375/41‑1 (MQ=255)
aTGCGATAGTGATAGTTGAGCAGCGGCGTCAGCGTCGCATc < 1:339421/41‑1 (MQ=255)
aTGCGATAGTGATAGTTGAGCAGCGGCGTCAGCGTCGCATc < 1:2291279/41‑1 (MQ=255)
aTGCGATAGTGATAGTTGAGCAGCGGCGTCAGCGTCGCATc < 1:2211034/41‑1 (MQ=255)
aTGCGATAGTGATAGTTGAGCAGCGGCGTCAGCGTCGCATc < 1:2189160/41‑1 (MQ=255)
aTGCGATAGTGATAGTTGAGCAGCGGCGTCAGCGTCGCATc < 1:353423/41‑1 (MQ=255)
aTGCGATAGTGATAGTTGAGCAGCGGCGTCAGCGTCGCATc < 1:3691608/41‑1 (MQ=255)
aTGCGATAGTGATAGTTGAGCAGCGGCGTCAGCGTCGCATc < 1:1674190/41‑1 (MQ=255)
aTGCGATAGTGATAGTTGAGCAGCGGCGTCAGCGTCGCATc < 1:904232/41‑1 (MQ=255)
aTGCGATAGTGATAGTTGAGCAGCGGCGTCAGCGTCGCATc < 1:1299724/41‑1 (MQ=255)
aTGCGATAGTGATAGTTGAGCAGCGGCGTCAGCGTCGCATCTGTCATTAACTGGCTAAAAAc > 1:3697110/1‑62 (MQ=255)
aTGCGATAGTGATAGTTGAGCAGCGGCGTCAGCGTCGCATCTGTCATTAACTGGCTAAAAAc > 1:2721632/1‑62 (MQ=255)
tGCGATAGTGATAGTTGAGCAGCGGCGTCAGCGTCGCATc < 1:344685/40‑1 (MQ=255)
tGCGATAGTGATAGTTGAGCAGCGGCGTCAGCGTCGCATCTGTCATTAACTGGCTaaa > 1:2681508/1‑58 (MQ=255)
tGCGATAGTGATAGTTGAGCAGCGGCGTCAGCGTCGCATCTGTCATTAACTGGCTAAAAAcc > 1:385803/1‑62 (MQ=255)
tGCGATAGTGATAGTTGAGCAGCGGCGTCAGCGTCGCATCTGTCATTAACTGGCTAAAAAcc > 1:3579802/1‑62 (MQ=255)
gCGATAGTGATAGTTGAGCAGCGGCGTCAGCGTCGCATCTGTCATTAACTGGCTAAAAAc < 1:4019176/60‑1 (MQ=255)
gCGATAGTGATAGTTGAGCAGCGGCGTCAGCGTCGCATCTGTCATTAACTGGCTAAAAAc < 1:2686141/60‑1 (MQ=255)
gCGATAGTGATAGTTGAGCAGCGGCGTCAGCGTCGCATCTGTCATTAACTGGCTAAAAAc < 1:4107914/60‑1 (MQ=255)
gCGATAGTGATAGTTGAGCAGCGGCGTCAGCGTCGCATCTGTCATTAACTGGCTAAAAAc < 1:2475615/60‑1 (MQ=255)
gCGATAGTGATAGTTGAGCAGCGGCGTCAGCGTCGCATCTGTCATTAACTGGCTAAAAAc < 1:3495287/60‑1 (MQ=255)
agtgatagtTGAGCAGCGGCGTCAGCGTCGCATCTGTCAtt > 1:4096020/1‑41 (MQ=255)
agtgatagtTGAGCAGCGGCGTCAGCGTCGCATCTGTCAtt > 1:991962/1‑41 (MQ=255)
agtgatagtTGAGCAGCGGCGTCAGCGTCGCATCTGTCAtt > 1:4467591/1‑41 (MQ=255)
agtgatagtTGAGCAGCGGCGTCAGCGTCGCATCTGTCAtt > 1:4587952/1‑41 (MQ=255)
agtgatagtTGAGCAGCGGCGTCAGCGTCGCATCTGTCAtt > 1:748873/1‑41 (MQ=255)
agtgatagtTGAGCAGCGGCGTCAGCGTCGCATCTGTCAtt > 1:3668699/1‑41 (MQ=255)
agtgatagtTGAGCAGCGGCGTCAGCGTCGCATCTGTCAtt > 1:3546399/1‑41 (MQ=255)
agtgatagtTGAGCAGCGGCGTCAGCGTCGCATCTGTCAtt > 1:1275735/1‑41 (MQ=255)
agtgatagtTGAGCAGCGGCGTCAGCGTCGCATCTGTCAtt > 1:1382648/1‑41 (MQ=255)
agtgatagtTGAGCAGCGGCGTCAGCGTCGCATCTGTCAtt > 1:1752915/1‑41 (MQ=255)
agtgatagtTGAGCAGCGGCGTCAGCGTCGCATCTGTCAtt > 1:2336803/1‑41 (MQ=255)
agtgatagtTGAGCAGCGGCGTCAGCGTCGCATCTGTCAtt > 1:2647252/1‑41 (MQ=255)
agtgatagtTGAGCAGCGGCGTCAGCGTCGCATCTGTCAtt > 1:2931317/1‑41 (MQ=255)
agtgatagtTGAGCAGCGGCGTCAGCGTCGCATCTGTCAtt > 1:3127511/1‑41 (MQ=255)
agtgatagtTGAGCAGCGGCGTCAGCGTCGCATCTGTCATTAACTGGCTAAAAACCGCt > 1:2193577/1‑59 (MQ=255)
agtgatagtTGAGCAGCGGCGTCAGCGTCGCATCTGTCATTAACTGGCTAAAAACCGCt > 1:3549337/1‑59 (MQ=255)
agtgatagtTGAGCAGCGGCGTCAGCGTCGCATCTGTCATTAACTGGCTAAAAACCGCt > 1:3381005/1‑59 (MQ=255)
agtgatagtTGAGCAGCGGCGTCAGCGTCGCATCTGTCATTAACTGGCTAAAAACCGCt > 1:650161/1‑59 (MQ=255)
agtgatagtTGAGCAGCGGCGTCAGCGTCGCATCTGTCATTAACTGGCTAAAAACCGCt > 1:617088/1‑59 (MQ=255)
agtgatagtTGAGCAGCGGCGTCAGCGTCGCATCTGTCATTAACTGGCTAAAAACCGCt > 1:208426/1‑59 (MQ=255)
agtgatagtTGAGCAGCGGCGTCAGCGTCGCATCTGTCATTAACTGGCTAAAAACCGCt > 1:3975647/1‑59 (MQ=255)
agtgatagtTGAGCAGCGGCGTCAGCGTCGCATCTGTCATTAACTGGCTAAAAACCGCt > 1:2630910/1‑59 (MQ=255)
agtgatagtTGAGCAGCGGCGTCAGCGTCGCATCTGTCATTAACTGGCTAAAAACCGCt > 1:4345058/1‑59 (MQ=255)
agtgatagtTGAGCAGCGGCGTCAGCGTCGCATCTGTCATTAACTGGCTAAAAACCGCt > 1:2857520/1‑59 (MQ=255)
agtgatagtTGAGCAGCGGCGTCAGCGTCGCATCTGTCATTAACTGGCTAAAAACCGCt > 1:4036862/1‑59 (MQ=255)
agtgatagtTGAGCAGCGGCGTCAGCGTCGCATCTGTCATTAACTGGATAAAAACCGCt > 1:2369741/1‑59 (MQ=38)
tGAGCAGCGGCGTCAGCGTCGCATCTGTCATTAACTGGCTAAAAACCGCTTTCAGGGCATTa < 1:3326860/62‑1 (MQ=255)
tGAGCAGCGGCGTCAGCGTCGCATCTGTCATTAACTGGCTAAAAACCGCTTTCAGGGCATTa < 1:543459/62‑1 (MQ=255)
tGAGCAGCGGCGTCAGCGTCGCATCTGTCATTAACTGGCTAAAAACCGCTTTCAGGGCATTa < 1:649005/62‑1 (MQ=255)
tGAGCAGCGGCGTCAGCGTCGCATCTGTCATTAACTGGCTAAAAACCGCTTTCAGGGCATTa < 1:3765531/62‑1 (MQ=255)
|
CACCGTTCACGCCGGGAGGGGCACTAATGCGATAGTGATAGTTGAACAGCGGCGTCAGCGTCGCATCTGTCATTAACTGGCTAAAAACCGCTTTCAGGGCATTA > W3110S.gb/464901‑465004
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
