Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R2
|
164 |
48.3 |
4710601 |
85.3% |
4018142 |
55.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
651,069 |
T→C |
N4S (AAT→AGT) |
citC ← |
citrate lyase synthetase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 651,069 | 0 | T | C | 100.0%
| 148.9
/ NA
| 41 | N4S (AAT→AGT) | citC | citrate lyase synthetase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (7/34); total (7/34) |
CGATTTCCGCCATTTTTTTATTTTCTGAACGTTTTACGCGGGTGAAAATATCATTGCCGAACATAATAAATAGTATCCTGAAGGTGCATGTTGTTATCGATTTGCAACGAAT > W3110S.gb/651016‑651127
|
cGATTTCCGCCATTTTTTTATTTTCTGAACGTTTTACGCGGGTGAAAATATCACTGCCGaa < 1:876641/61‑1 (MQ=255)
cGATTTCCGCCATTTTTTTATTTTCTGAACGTCTTACGCGGGTGAAAATATCACTGCCGaa < 1:2751599/61‑1 (MQ=255)
gATTTCCGCCATTTTTTTATTTTCTGAACGTTTTACGCGGGTGAAAATATCACTGCCGaa < 1:2402396/60‑1 (MQ=255)
tttttttATTTTCTGAACGTTTTACGCGGGTGAAAATATCACTGCCGAACATAATAAATAGt > 1:2582491/1‑62 (MQ=255)
cgGGTGAAAATATCACTGCCGAACATAATAAATAGTATCCTGAAGGTGCATGTTGTTATCGa > 1:1237022/1‑62 (MQ=255)
cgGGTGAAAATATCACTGCCGAACATAATAAATAGTATCCTGAAGGTGCATGTTGTTATCGa > 1:2664232/1‑62 (MQ=255)
cgGGTGAAAATATCACTGCCGAACATAATAAATAGTATCCTGAAGGTGCATGTTGTTATCGa > 1:862361/1‑62 (MQ=255)
ggTGAAAATATCACTGCCGAACATAATAAATAGTATCCTGaa > 1:519941/1‑42 (MQ=255)
ggTGAAAATATCACTGCCGAACATAATAAATAGTATCCTGaa > 1:3699578/1‑42 (MQ=255)
ggTGAAAATATCACTGCCGAACATAATAAATAGTATCCTGaa > 1:482560/1‑42 (MQ=255)
ggTGAAAATATCACTGCCGAACATAATAAATAGTATCCTGAAGGTGCATGTTGTTATCGAtt < 1:4508618/62‑1 (MQ=255)
aaaaTATCACTGCCGAACATAATAAATAGTATCCTGAAGGTGCAtgtt < 1:4686805/48‑1 (MQ=255)
aaaaTATCACTGCCGAACATAATAAATAGTATCCTGAAGGTGCAtgtt < 1:3006130/48‑1 (MQ=255)
aaaaTATCACTGCCGAACATAATAAATAGTATCCTGAAGGTGCAtgtt < 1:846460/48‑1 (MQ=255)
aaaaTATCACTGCCGAACATAATAAATAGTATCCTGAAGGTGCAtgtt < 1:4603535/48‑1 (MQ=255)
aaaaTATCACTGCCGAACATAATAAATAGTATCCTGAAGGTGCAtgtt < 1:4263276/48‑1 (MQ=255)
aaaaTATCACTGCCGAACATAATAAATAGTATCCTGAAGGTGCAtgtt < 1:4342588/48‑1 (MQ=255)
aaaaTATCACTGCCGAACATAATAAATAGTATCCTGAAGGTGCAtgtt < 1:455812/48‑1 (MQ=255)
aaaaTATCACTGCCGAACATAATAAATAGTATCCTGAAGGTGCAtgtt < 1:707285/48‑1 (MQ=255)
aaaaTATCACTGCCGAACATAATAAATAGTATCCTGAAGGTGCAtgtt < 1:2314366/48‑1 (MQ=255)
aaaaTATCACTGCCGAACATAATAAATAGTATCCTGAAGGTGCAtgtt < 1:2189798/48‑1 (MQ=255)
aaaaTATCACTGCCGAACATAATAAATAGTATCCTGAAGGTGCAtgtt < 1:2165804/48‑1 (MQ=255)
aaaaTATCACTGCCGAACATAATAAATAGTATCCTGAAGGTGCAtgtt < 1:1777808/48‑1 (MQ=255)
aaaaTATCACTGCCGAACATAATAAATAGTATCCTGAAGGTGCAtgtt < 1:1508341/48‑1 (MQ=255)
aaaaTATCACTGCCGAACATAATAAATAGTATCCTGAAGGTGCAtgtt < 1:120059/48‑1 (MQ=255)
aaaTATCACTGCCGAACATAATAAATAGTATCCTGAAGGTGCAtgtt < 1:851457/47‑1 (MQ=255)
atatCACTGCCGAACATAATAAATAGTATCCTGAAGGTGCATGTTGTTATCGaat < 1:2100404/55‑3 (MQ=255)
atatCACTGCCGAACATAATAAATAGTATCCTGAAGGTGCATGTTGTTATCGAtt < 1:942740/55‑1 (MQ=255)
atatCACTGCCGAACATAATAAATAGTATCCTGAAGGTGCATGTTGTTATCGAtt < 1:1006845/55‑1 (MQ=255)
atatCACTGCCGAACATAATAAATAGTATCCTGAAGGTGCATGTTGTTATCGAtt < 1:4128778/55‑1 (MQ=255)
atatCACTGCCGAACATAATAAATAGTATCCTGAAGGTGCATGTTGTTATCGAtt < 1:3194328/55‑1 (MQ=255)
atatCACTGCCGAACATAATAAATAGTATCCTGAAGGTGCATGTTGTTATCGAtt < 1:2957648/55‑1 (MQ=255)
atatCACTGCCGAACATAATAAATAGTATCCTGAAGGTGCATGTTGTTATCGAtt < 1:2720238/55‑1 (MQ=255)
atatCACTGCCGAACATAATAAATAGTATCCTGAAGGTGCATGTTGTTATCGAtt < 1:2484449/55‑1 (MQ=255)
atatCACTGCCGAACATAATAAATAGTATCCTGAAGGTGCATGTTGTTATCGAtt < 1:2084566/55‑1 (MQ=255)
atatCACTGCCGAACATAATAAATAGTATCCTGAAGGTGCATGTTGTTATCGAtt < 1:172017/55‑1 (MQ=255)
atatCACTGCCGAACATAATAAATAGTATCCTGAAGGTGCATGTTGTTATCGAtt < 1:1048865/55‑1 (MQ=255)
tCACTGCCGAACATAATAAATAGTATCCTGAAGGTGCATGTTGTTATCGAtt < 1:730829/52‑1 (MQ=255)
tCACTGCCGAACATAATAAATAGTATCCTGAAGGTGCATGTTGTTATCGATTTGCAACGAAt < 1:4071941/62‑1 (MQ=255)
tCACTGCCGAACATAATAAATAGTATCCTGAAGGTGCATGTTGTTATCGATTTGCAACGAAt < 1:814312/62‑1 (MQ=255)
tCACTGCCGAACATAATAAATAGTATCCTGAAGGTGCATGTTGTTATCGATTTGCAACGAAt < 1:1302139/62‑1 (MQ=255)
|
CGATTTCCGCCATTTTTTTATTTTCTGAACGTTTTACGCGGGTGAAAATATCATTGCCGAACATAATAAATAGTATCCTGAAGGTGCATGTTGTTATCGATTTGCAACGAAT > W3110S.gb/651016‑651127
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
