Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R2
|
164 |
48.3 |
4710601 |
85.3% |
4018142 |
55.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,008,134 |
C→T |
intergenic (‑112/‑132) |
ycbX ← / → ycbY |
predicted 2Fe‑2S cluster‑containing protein/predicted methyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,008,134 | 0 | C | T | 100.0%
| 265.5
/ NA
| 79 | intergenic (‑112/‑132) | ycbX/ycbY | predicted 2Fe‑2S cluster‑containing protein/predicted methyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (37/42); total (37/42) |
TTAGCTATAATGCGCAACAATTTTCTTAGCGCCTGTCCCATTAGGCTATTTTATTTGTCAGTTTGGCCCTGGGTTATGCTCGAAATCCTCACGTACTTGTGTACGCTCCGGTTT > W3110S.gb/1008076‑1008189
|
ttaGCTATAATGCGCAACAATTTTCTTAGCGCCTGTCCCATTAGGCTATTTTATTTGTTAGt > 1:3816352/1‑62 (MQ=255)
ttaGCTATAATGCGCAACAATTTTCTTAGCGCCTGTCCCATTAGGCTATTTTATTTGTTAGt > 1:594621/1‑62 (MQ=255)
taGCTATAATGCGCAACAATTTTCTTAGCGCCTGTCCCATTAGGCTATTTTATTTGTTAGt < 1:4022590/61‑1 (MQ=255)
taGCTATAATGCGCAACAATTTTCTTAGCGCCTGTCCCATTAGGCTATTTTATTTGTTAGt < 1:3135230/61‑1 (MQ=255)
taGCTATAATGCGCAACAATTTTCTTAGCGCCTGTCCCATTAGGCTATTTTATTTGTTAGt < 1:3118646/61‑1 (MQ=255)
taGCTATAATGCGCAACAATTTTCTTAGCGCCTGTCCCATTAGGCTATTTTATTTGTTAGt < 1:336158/61‑1 (MQ=255)
taGCTATAATGCGCAACAATTTTCTTAGCGCCTGTCCCATTAGGCTATTTTATTTGTTAGt < 1:3655344/61‑1 (MQ=255)
taGCTATAATGCGCAACAATTTTCTTAGCGCCTGTCCCATTAGGCTATTTTATTTGTTAGt < 1:4366363/61‑1 (MQ=255)
taGCTATAATGCGCAACAATTTTCTTAGCGCCTGTCCCATTAGGCTATTTTATTTGTTAGt < 1:1723355/61‑1 (MQ=255)
taGCTATAATGCGCAACAATTTTCTTAGCGCCTGTCCCATTAGGCTATTTTATTTGTTAGt < 1:1482977/61‑1 (MQ=255)
taGCTATAATGCGCAACAATTTTCTTAGCGCCTGTCCCATTAGGCTATTTTATTTGTTAGt < 1:503929/61‑1 (MQ=255)
taGCTATAATGCGCAACAATTTTCTTAGCGCCTGTCCCATTAGGCTATTTTATTTGTTAGt < 1:988484/61‑1 (MQ=255)
taGCTATAATGCGCAACAATTTTCTTAGCGCCTGTCCCATTAGGCTATTTTATTTGTTAGt < 1:727174/61‑1 (MQ=255)
tataATGCGCAACAATTTTCTTAGCGCCTGTCCCATTAGGCTATTTTATTTGTTAGTTTGGc < 1:1405054/62‑1 (MQ=255)
tataATGCGCAACAATTTTCTTAGCGCCTGTCCCATTAGGCTATTTTATTTGTTAGTTTGGc < 1:1131311/62‑1 (MQ=255)
tataATGCGCAACAATTTTCTTAGCGCCTGTCCCATTAGGCTATTTTATTTGTTAGTTTGGc < 1:1138800/62‑1 (MQ=255)
aTGCGCAACAATTTTCTTGGCGCCTGTCCCATTAGGCTATTTTATTTGTTAGTTTGGCCCTg > 1:4588550/1‑62 (MQ=255)
aTGCGCAACAATTTTCTTAGCGCCTGTCCCATTAGGCTATTTTATTTGTTAGtt > 1:629460/1‑54 (MQ=255)
aTGCGCAACAATTTTCTTAGCGCCTGTCCCATTAGGCTATTTTATTTGTTAGTTTGGc < 1:3110788/58‑1 (MQ=255)
aTGCGCAACAATTTTCTTAGCGCCTGTCCCATTAGGCTATTTTATTTGTTAGTTTGGc < 1:2984366/58‑1 (MQ=255)
aTGCGCAACAATTTTCTTAGCGCCTGTCCCATTAGGCTATTTTATTTGTTAGTTTGGc < 1:1879606/58‑1 (MQ=255)
aTGCGCAACAATTTTCTTAGCGCCTGTCCCATTAGGCTATTTTATTTGTTAGTTTGGc < 1:3349408/58‑1 (MQ=255)
aTGCGCAACAATTTTCTTAGCGCCTGTCCCATTAGGCTATTTTATTTGTTAGTTTGGc < 1:454426/58‑1 (MQ=255)
aTGCGCAACAATTTTCTTAGCGCCTGTCCCATTAGGCTATTTTATTTGTTAGTTTGGc < 1:3359714/58‑1 (MQ=255)
aTGCGCAACAATTTTCTTAGCGCCTGTCCCATTAGGCTATTTTATTTGTTAGTTTGGCCCTg > 1:3215149/1‑62 (MQ=255)
aTGCGCAACAATTTTCTTAGCGCCTGTCCCATTAGGCTATTTTATTTGTTAGTTTGGCCCTg > 1:413176/1‑62 (MQ=255)
aTGCGCAACAATTTTCTTAGCGCCTGTCCCATTAGGCTATTTTATTTGTTAGTTTGGCCCTg > 1:2936633/1‑62 (MQ=255)
aTGCGCAACAATTTTCTTAGCGCCTGTCCCATTAGGCTATTTTATTTGTTAGTTTGGCCCTg > 1:3220351/1‑62 (MQ=255)
aTGCGCAACAATTTTCTTAGCGCCTGTCCCATTAGGCTATTTTATTTGTTAGTTTGGCCCTg > 1:2799917/1‑62 (MQ=255)
aTGCGCAACAATTTTCTTAGAGCCTGTCCCATTAGGCTATTTTATTTGTTAGTTTGGCCCTg > 1:2143958/1‑62 (MQ=255)
acaaTTTTCTTAGCGCCTGTCCCATTAGGCTATTTTATTTGTTAGTTTGGCCCTGGGt > 1:4669662/1‑58 (MQ=255)
acaaTTTTCTTAGCGCCTGTCCCATTAGGCTATTTTATTTGTTAGTTTGGCCCTGGGt > 1:2607443/1‑58 (MQ=255)
acaaTTTACTTAGCGCCTGTCCCATTAGGCTATTTTATTTGTTAGTTTGGCCCTGGGTTATg > 1:2096430/1‑62 (MQ=255)
tttCTTAGCGCCTGTCCCATTAGGCTATTTTATTTGTTAGTTTGGc < 1:713070/46‑1 (MQ=255)
cTGTCCCATTAGGCTATTTTATTTGTTAGTTTGGCCCTGGGTTATGCTCGAAATCCTCACGt < 1:2682630/62‑1 (MQ=255)
cTGTCCCATTAGGCTATTTTATTTGTTAGTTTGGCCCTGGGTTATGCTCGAAATCCTCACGt < 1:3968523/62‑1 (MQ=255)
cTGTCCCATTAGGCTATTTTATTTGTTAGTTTGGCCCTGGGTTATGCTCGAAATCCTCACGt < 1:1212202/62‑1 (MQ=255)
cTGTCCCATTAGGCTATTTTATTTGTTAGTTTGGCCCTGGGTTATGCTCGAAATCCTCACGt < 1:4375101/62‑1 (MQ=255)
cTGTCCCATTAGGCTATTTTATTTGTTAGTTTGGCCCTGGGTTATGCTCGAAATCCTCACGt < 1:750111/62‑1 (MQ=255)
tGTCCCATTAGGCTATTTTATTTGTTAGTTTGGCCCTGGGTTATGCTCGAAATCCTCACGt < 1:394876/61‑1 (MQ=255)
gTCCCATTAGGCTATTTTATTTGTTAGTTTGGCCCTGGGTTATGCTCGAAATCCTCACGTAc < 1:2053206/62‑1 (MQ=255)
gCTATTTTATTTGTTAGTTTGGCCCTGGGTTATGCTCGAAATCCTCACGTACTTGTGTACg < 1:1692062/61‑1 (MQ=255)
tattttatttGTTAGTTTGGCCCTGGGTTATGCTCGAAATCCTCACGTACTTGTGTACgata > 1:1015599/1‑59 (MQ=255)
tattttatttGTTAGTTTGGCCCTGGGTTATGCTCGAAATCCTCACGTACTTGTGTACGCTc > 1:1036108/1‑62 (MQ=255)
tattttatttGTTAGTTTGGCCCTGGGTTATGCTCGAAATCCTCACGTACTTGTGTACGCTc > 1:1546524/1‑62 (MQ=255)
tattttatttGTTAGTTTGGCCCTGGGTTATGCTCGAAATCCTCACGTACTTGTGTACGCTc > 1:4391718/1‑62 (MQ=255)
tattttatttGTTAGTTTGGCCCTGGGTTATGCTCGAAATCCTCACGTACTTGTGTACGCTc > 1:1298795/1‑62 (MQ=255)
tattttatttGTTAGTTTGGCCCTGGGTTATGCTCGAAATCCTCACGTACTTGTGTACGCTc > 1:691715/1‑62 (MQ=255)
attttatttGTTAGTTTGGCCCTGGGTTATGCTCGAAATCCTCAc < 1:1007318/45‑1 (MQ=255)
attttatttGTTAGTTTGGCCCTGGGTTATGCTCGAAATCCTCAc < 1:4611695/45‑1 (MQ=255)
attttatttGTTAGTTTGGCCCTGGGTTATGCTCGAAATCCTCAc < 1:4467512/45‑1 (MQ=255)
attttatttGTTAGTTTGGCCCTGGGTTATGCTCGAAATCCTCAc < 1:2993526/45‑1 (MQ=255)
attttatttGTTAGTTTGGCCCTGGGTTATGCTCGAAATCCTCAc < 1:2457402/45‑1 (MQ=255)
attttatttGTTAGTTTGGCCCTGGGTTATGCTCGAAATCCTCAc < 1:2485839/45‑1 (MQ=255)
attttatttGTTAGTTTGGCCCTGGGTTATGCTCGAAATCCTCAc < 1:2591995/45‑1 (MQ=255)
tttatttGTTAGTTTGGCCCTGGGTTATGCTCGAAATCCTCACGTACTTGTGTACGCTCCgg > 1:1819223/1‑62 (MQ=255)
tttatttGTTAGTTTGGCCCTGGGTTATGCTCGAAATCCTCACGTACTTGTGTACGCTCCgg > 1:3465911/1‑62 (MQ=255)
tttatttGTTAGTTTGGCCCTGGGTTATGCTCGAAATCCTCACGTACTTGTGTACGCTCCgg > 1:3464497/1‑62 (MQ=255)
tttatttGTTAGTTTGGCCCTGGGTTATGCTCGAAATCCTCACGTACTTGTGTACGCTCCgg > 1:1474072/1‑62 (MQ=255)
ttatttGTTAGTTTGGCCCTGGGTTATGCTCGAAATc < 1:3706172/37‑1 (MQ=255)
ttatttGTTAGTTTGGCCCTGGGTTATGCTCGAAATc < 1:1297548/37‑1 (MQ=255)
ttatttGTTAGTTTGGCCCTGGGTTATGCTCGAAATc < 1:1783049/37‑1 (MQ=255)
ttatttGTTAGTTTGGCCCTGGGTTATGCTCGAAATc < 1:629336/37‑1 (MQ=255)
ttatttGTTAGTTTGGCCCTGGGTTATGCTCGAAATc < 1:2527437/37‑1 (MQ=255)
tttGTTAGTTTGGCCCTGGGTTATGCTCGAAATCCTCACGTACTTGTGTACGCTCCGGttt < 1:1314874/61‑1 (MQ=255)
ttGTTAGTTTGGCCCTGGGTTATGCTCGAAATCCTCACGTACTtg > 1:1193451/1‑45 (MQ=255)
ttGTTAGTTTGGCCCTGGGTTATGCTCGAAATCCTCACGTACTtg > 1:533178/1‑45 (MQ=255)
ttGTTAGTTTGGCCCTGGGTTATGCTCGAAATCCTCACGTACTtg > 1:1385386/1‑45 (MQ=255)
ttGTTAGTTTGGCCCTGGGTTATGCTCGAAATCCTCACGTACTtg > 1:1716547/1‑45 (MQ=255)
ttGTTAGTTTGGCCCTGGGTTATGCTCGAAATCCTCACGTACTtg > 1:1647890/1‑45 (MQ=255)
ttGTTAGTTTGGCCCTGGGTTATGCTCGAAATCCTCACGTACTtg > 1:4383544/1‑45 (MQ=255)
ttGTTAGTTTGGCCCTGGGTTATGCTCGAAATCCTCACGTACTtg > 1:1731005/1‑45 (MQ=255)
ttGTTAGTTTGGCCCTGGGTTATGCTCGAAATCCTCACGTACTtg > 1:2284213/1‑45 (MQ=255)
ttGTTAGTTTGGCCCTGGGTTATGCTCGAAATCCTCACGTACTtg > 1:2403900/1‑45 (MQ=255)
ttGTTAGTTTGGCCCTGGGTTATGCTCGAAATCCTCACGTACTtg > 1:3676442/1‑45 (MQ=255)
ttGTTAGTTTGGCCCTGGGTTATGCTCGAAATCCTCACGTACTtg > 1:3511764/1‑45 (MQ=255)
ttGTTAGTTTGGCCCTGGGTTATGCTCGAAATCCTCACGTACTtg > 1:2709137/1‑45 (MQ=255)
ttGTTAGTTTGGCCCTGGGTTATGCTCGAAATCCTCACGTACTtg > 1:2895655/1‑45 (MQ=255)
ttGTTAGTTTGGACCTGGGTTATGCTCGAAATCCTCACGTACTtg > 1:4175557/1‑45 (MQ=25)
|
TTAGCTATAATGCGCAACAATTTTCTTAGCGCCTGTCCCATTAGGCTATTTTATTTGTCAGTTTGGCCCTGGGTTATGCTCGAAATCCTCACGTACTTGTGTACGCTCCGGTTT > W3110S.gb/1008076‑1008189
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
